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33 protocols using pt 5006

1

CRISPR-mediated BRCA1 knockdown in ASCs

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One commercial ASC line (Lonza PT-5006) was obtained for CRISPR-mediated BRCA1 knockdown. ASCs were maintained in ASC growth media (Lonza PT-3273 & PT-4503). Cell media was changed every 3 days, and 0.5% Typsin were used to passage the cells every 6 days according to published protocol (9 (link)). Maintenance of adipogenesis of the ASCs was confirmed by culturing 1×105 ASCs in adipogenic induction media (Lonza PT-3004) for 14 days. Cells were fixed with 4% paraformaldehyde and stained with Oil Red O (Sigma O0625).
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2

Adipocyte Differentiation Protocol from Human Adipose-Derived Stem Cells

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hASCs were purchased from Lonza Walkersville, Inc. (Walkersville, MD, USA); the cells were derived from a female donor (non-diabetic, BMI 26 kg/m2, 36 years old) (PT5006 lot 0000410257). The cells (passage 4) were pre-cultured as described by Yamada et al. [33 (link)]. Briefly, 2 × 104 cells/mL of the cells were cultured in 50% Dulbecco’s modified Eagle’s medium (DMEM)/50% α minimum essential medium supplemented with 1% fetal bovine serum (FBS), 1 × ITS, 10 ng mL-1 bFGF (PeproTech Inc., NJ, USA), and 400 ng mL-1 of hydrocortisone on a 24-well plate for 3 days, until cells became confluent. To induce adipocyte-differentiation, post-confluent preadipocytes were stimulated in MDI differentiation medium (DMEM containing 10% FBS, 1 μM DEX, 0.5 mM IBMX, 0.2 mM indomethacin, 10 μg mL-1 insulin, and 33 μM biotin) for 7 days (Day 0–7). During cultivation, the culture was replaced with fresh MDI differentiation medium every 2 days with or without Euglena extract. Then, cells were maintained for a further 7 days (Day 7–14) in adipocyte nutrition medium (DMEM containing 10% FBS, 10 μg mL-1 insulin, and 33 μM biotin), which was replaced with fresh culture every 2 days. All cells were cultured at 37°C under a 5% CO2 atmosphere. All the above reagents were purchased from Sigma-Aldrich (St. Louis, MO, USA).
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3

Collagen-based Bioink Formulation

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To obtain a 2 wt% collagen solution, type I collagen was initially dissolved in 0.1 M acetic acid (pH 4.0) at a concentration of 4 wt%. The solution was then neutralized by mixing with an equal volume of 10 M DMEM (Gibco, USA) solution in a 1:1 vol ratio to achieve a final concentration of 2 wt%. The C2C12 murine skeletal muscle cell line (CRL-1772; ATCC, Manassas, VA, USA) at a density of 1 × 107 cells/mL or hASCs (PT-5006; Lonza, Basel, Switzerland) at a density of 1 × 106 cells/mL were loaded into the collagen solution to formulate the bioink.
Additionally, for the bioink used in the N-printing process, a 4 wt% collagen solution was prepared by initially dissolving it in 0.1 M acetic acid at 8 wt%, followed by neutralizing by mixing it thoroughly with an equal volume of 10 M DMEM (Gibco, USA) to achieve a final concentration of 4 wt%. The solution was loaded with hASCs at a density of 1 × 106 cells/mL to form a bioink.
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4

Generation of Human Cardiac Organoids

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hPSC-CMs (iCell Cardiomyocytes, Cellular Dynamics) were cultured according to the manufacturer’s protocol. iCell Cardiomyocytes (donor 01434) were used for all experiments. Briefly, hPSC-derived CMs were plated on a 0.1% gelatin coated 6 well plates in iCell Cardiomyocyte Plating Medium (CDI) at a density of 3–4 × 105 cells per well and incubated at 37 °C in 5% CO2 for 4 days. 2 days after plating, the plating medium was replaced with iCell Cardiomyocyte maintenance medium (CDI). After 4 days of monolayer preculture, cardiomyocytes were lifted using trypLE Express (Gibco Life Technologies) and prepared for organoid fabrication. Human cardiac ventricular fibroblasts (CC-2904, 0000401462, Lonza) were cultured in FGM-2 medium (Lonza), at passages 3–4 for organoid fabrication. Human umbilical vein endothelial cells (HUVECS; C2519A) were cultured in EGM-3 medium (Lonza) and were used passages 2–3 for organoids fabrication. Human adipose-derived stem cells (hADSCs; PT-5006, 0000410257, Lonza) were cultured in low-glucose Dulbecco’s modified Eagle’s medium supplemented with 10% FBS and 1% Penicillin-streptomycin, 1% glutamine and 1% antimycin (Gibco Life Technologies). hADSCs were used at passages 3–5 for organoid fabrication.
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5

Culturing Human Adipose-Derived Stem Cells

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Human adipose-derived stem cells (hASCs, Lonza PT-5006) were cultured in ADSC Growth Medium Bulletkit (Lonza PT-3273 & PT-4503) containing 10% fetal bovine serum (FBS), 1% l-Glutamine, and 0.1% Gentamicin Sulfate-Amphotericin (GA-1000). All cultures were maintained at 5% CO2 and 37 °C with media changes every 2–3 days. Cell passage p4-p5 were used for all cultures.
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6

Culturing Human Adipose-Derived Stem Cells

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Normal human adipose-derived stem cells (ADSC) (PT-5006; Lonza, Basel, Switzerland) were routinely maintained in a DMEM medium (Dulbecco’s Modified Eagle Medium, Lonza, Basel, Switzerland), which was supplemented with fetal bovine serum (FBS, EuroClone, Pero, Italy), at 37 °C in a 5% CO2 incubator (Direct Heat CO2; Thermo Fisher Scientific, Waltham, MA, USA). The ADSC that were used for the experiment were at second passage.
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7

Adipogenic Differentiation of hASCs

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Commercially available hASCs (PT-5006, Batch 0,000,535,975, Lonza) were used at passage 2 or 3. Cells were seeded at a density of 25,000 cells/cm2 in CM. The media was changed every other day. When cells reached confluence differentiation was initiated (designated as day 0). Cells were then maintained in Dulbecco’s modified Eagle’s Ham’s F12 (DMEM/F12) media supplemented with 850 nM insulin, 250 µM isobutyl-methylxanthine, 125 nM indomethacin, 0.5 μM dexamethasone, 1 µM rosiglitazone and 120 nM triiodothyronine. Differentiation media was changed every other day.
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8

Characterization and Culture of BM-MSCs and Ad-MSCs

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Human BM-MSCs (PT-2501) and Ad-MSCs (PT-5006) were purchased and characterized by the company (Lonza Walkersville Inc., Walkersville, MD). These cells were tested for purity of cell surface markers (positive for CD29, CD44, CD73, CD90, CD105, and CD166, but negative for CD14, CD34, and CD45), and for their ability to differentiate into osteogenic, chondrogenic, and adipogenic lineages. The cells were cultured with MSC growth medium or ADSC growth medium respectively, based on the manufacturer’s instructions (Lonza) and our previous experience [4 (link)]. CM was generated as shown in Figure S1. Briefly, the supernatant was sequentially concentrated to 100-fold by centrifugation through the Amicon Ultra Centrifugal Filter (membranes cutoff >3 kDa, EMD Millipore) as we previously described [15 , 17 (link)]. The concentrated CM from the filtrate tube of the top unit was diluted in University of Wisconsin (UW) solution to the final concentration as indicated in Figure S1A. The BM-MSC CM and Ad-MSC CM were used in experimental groups as shown in Figure S2. We did not observe any difference in cell morphology and growth rate between BM-MSCs and Ad-MSCs during the culture (Figure S3).
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9

Culturing Adipose-Derived Stem Cells

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The hADSCs were purchased from Lonza (PT-5006; Lonza, Switzerland) and cultured in a culture medium comprising adipose-derived stem cell basal medium, 10% fetal calf serum (FCS), 1% L-glutamine, and 0.1% gentamicin–amphotericin B (ADSC Growth Medium BulletKitTM, PT-4505; Lonza, Switzerland). The cells were fed every 3 days and subcultured at 90% confluency.
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10

Establishing Multiple hiPSC Lines

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All cell lines were maintained in a humidified atmosphere at 37 °C with 5% CO2 in air (21% O2, 5% CO2). We used three types of previously established hiPSCs: cells from menstrual blood (EDOM), cells from the human skin fibroblast (HSF) derived cells, and human adipose tissue-derived stem cells (ADSCs; female, PT5006; Lonza Bioscience, Walkersville, MD, USA). EDOM-iPS cells (EDOM#6-iPSCs) were generated using a Cyto-Tune™-iPS Sendai Reprogramming Kit (Thermo Fisher Scientific, Waltham, MA, USA). The other lines (ADSC-A5 and HSF02) were established through direct delivery of mRNAs encoding reprogramming factors (Stemgent StemRNA 3rd Gen Reprogramming Kit; Reprocell, Yokohama, Japan) and cultured in StemFlex™ Medium (Thermo Fisher Scientific) on vitronectin (Thermo Fisher Scientific, for EDOM#6 and ADSC-A5) (10 (link)) or iMatrix-511 (Nippi, Tokyo, Japan, for HSF02). Cells were passaged every 5–7 days by dissociation with Accutase (Thermo Fisher Scientific), and replated onto a matrix coated plate with a ROCK inhibitor (Y-27632; FUJIFILM Wako Pure Chemical, Tokyo, Japan) at a final concentration of 10 µM. These cells were replated at a density of 2×103 cells/cm2. The medium was replaced completely every day, except on the day after passage.
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