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7 protocols using donkey serum

1

Immunofluorescence Staining of β-Catenin in A549 Cells

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A549 cells transfected with specific plasmids were seeded in 24-well plates at the indicated time points before immunofluorescence staining. The cells were washed in PBS and fixed with 4% paraformaldehyde for 30 min at room temperature. After cells were washed with PBS, the cells were permeabilized using 0.25% Triton-X-100 for 5 min at room temperature and blocked in 10% donkey serum (BeyotimeInstitute of Biotechnology; Nanjing, China) for 30 min. The cells were subsequently incubated with primary antibodies against β-catenin (1:100; cat. no. ab16051; Abcam) overnight at 4°C. The following day, cells were washed in PBS and then incubated at room temperature for 1 h with a fluorescent-labeled secondary antibody (1:200; cat. no. A0562; BeyotimeInstitute of Biotechnology), followed by incubation with DAPI (1:1,000; cat. no. C1002; BeyotimeInstitute of Biotechnology). Images were captured under a confocal microscope.
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2

Immunofluorescence Visualization of Chondrocyte Markers

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TNF-α- and IL-1β-treated rat chondrocytes were rinsed in PBS and then fixed with 10% neutral-buffered formalin for 30 min at 21 °C. Cells were incubated with Triton X-100 (Beyotime Biotechnology, Beijing, China) for 10 min to penetrate the cell membrane and donkey serum (Beyotime Biotechnology) for 1 h to block nonspecific binding sites. Cultured cells were incubated with primary antibodies against type II collagen (ab34712; Abcam; 1:100), SOX9 (ab185966; Abcam; 1:100), and LRP3 (sc-373736; Santa Cruz Biotechnology, USA; 1:50) at 4 °C overnight. The cells were then washed with PBS three times and incubated with Alexa Fluor 488-conjugated goat anti-rabbit (A-11008, Thermo Fisher Scientific; 1:200) or Alexa Fluor 594-conjugated goat anti-mouse (A-11005, Thermo Fisher Scientific; 1:200) secondary antibodies for 1 h at 21 °C. Nuclei were stained with DAPI (Beyotime Institute of Biotechnology, Jiangsu, China) for 10 min. Finally, the samples were rinsed with PBS and visualized using a confocal microscope (Olympus Life Science, Tokyo, Japan).
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3

Immunofluorescence Analysis of SMAD3 in HeLa Cells

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HeLa cells transfected with specific plasmids were seeded in 24‐well plates at the indicated time points before immunofluorescence staining. Cells were washed in PBS and fixed with 4% paraformaldehyde for 30 minutes at room temperature. After cells were washed with PBS, the cells were permeabilized using 0.25% Triton‐X‐100 for 5 minutes at room temperature and blocked in 10% donkey serum (Beyotime Biotechnology, Nanjing, China) for 30 minutes. The cells were subsequently incubated with primary antibodies against SMAD3 (1:200; Abcam, Cambridge, MA, USA) overnight at 4°C. The following day, cells were washed in PBS and then incubated at room temperature for 1 hour with a fluorescent‐labeled secondary antibody (1:200; Beyotime Biotechnology), followed by incubation with DAPI (1:1000; Beyotime Biotechnology). Images were captured under a confocal microscope.
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4

Immunofluorescence Analysis of Chondrocyte Markers

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Cultured chondrocytes were rinsed in PBS, and then fixed with 10% neutral buffered formalin for 30 min at room temperature. Triton X-100 (Beyotime Biotechnology) was used to penetrate the cell membrane for 5 min, and donkey serum (Beyotime Biotechnology) was applied to block nonspecific binding sites for 1 h. Cultured cells were incubated with primary antibodies against type II collagen (Abcam; 1:200) and SOD3 (Santa Cruz Biotechnology; 1:100) at 4 °C overnight. The cells were then washed with PBS three times, and then incubated with fluorescein isothiocyanate (FITC)-conjugated anti-rabbit IgG (Abcam; 1:1000) or anti-mouse IgG (Biolegend, USA; 1:200) for 1 h. Nuclei were stained with Hoechst 33258 for 5 min. Finally, the samples were rinsed with PBS and visualized using confocal microscopy. LAS_X software (Flexera software LLC) was applied to quantify the fluorescence intensity of rat chondrocytes from at least 6 images.
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5

Immunofluorescence Assay of p65 Translocation

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Cells transfected with the indicated plasmids before IF assay. Forty-eight hours later, the cells were washed with 1×PBS, fixed in 4% paraformaldehyde for 30 min and blocked with 10% donkey serum (Beyotime Institute of Biotechnology; Nanjing, China) for 30 min at room temperature. The primary antibody against p65 was incubated overnight at 4°C. The fluorescein isothiocyanate (FITC)-conjugated secondary antibody was added and incubated for 2 h, followed by incubation with DAPI. Fluorescence images were captured using a confocal microscope.
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6

Investigating NF-κB Pathway Regulation

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4×104 A549 cells transfected with specific plasmids (1 µg pcDNA3, 1 µg pri-miR-505, 1 µg MAP3K3 or 0.5 µg pri-miR-505+0.5 µg MAP3K3) using Lipofectamine® 2000, according to the manufacturer's protocols were seeded with Dulbecco's modified Eagle's medium containing 10% FBS in 24-well plates for 48 h and then for immunofluorescence staining. The cells were washed in PBS three times and fixed with 4% paraformaldehyde for 30 min at room temperature. Following cells being washed with PBS three times, the cells were permeabilized using 0.1% Triton-X-100 for 10 min at room temperature and blocked in 10% donkey serum (Beyotime Institute of Biotechnology) for 30 min at room temperature. The cells were subsequently incubated with primary antibodies against p50 (cat. no. WL01917, 1:50) and p65 (cat. no. WL01980; 1:50) (both from Wanlei Co., Ltd.) overnight at 4°C. The following day, cells were washed in PBS three times and then incubated at room temperature for 1 h with a goat anti-rabbit IgG H&L Alexa Fluor® 488 (cat. no. ab150077; 1:100; Abcam), followed by incubation with DAPI (1:1,000; Sigma-Aldrich; Merck KGaA) at room temperature. Images were captured under a confocal microscope (at ×1,000).
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7

Immunohistochemistry of Frozen Sections

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Formalin-xed OCT-embedded frozen sections (40 µm thick) were permeabilized with 0.3% Triton X-100 (Beyotime Biotechnology Co., Ltd, ST797, Shanghai, China) in PBS, followed by blocking for 4 h in 0.3% Triton X-100 with 10% donkey serum (Beyotime Biotechnology Co., Ltd, A7039, Shanghai, China). The sections were incubated in the primary antibody diluted in 0.3% Triton X-100 with 10% donkey serum for 48 h at 4°C. After primary antibody incubation, the sections were washed in PBS and incubated in the secondary antibody diluted in 0.3% Triton X-100 with 10% donkey serum for 4h at room temperature (RT). Sections were washed three times in PBS and incubated in Hoechst 33342 (1:2,000; Thermo Fisher) for 15 min at RT for nuclear counterstaining. The sections were then mounted on microscope slides, sealed with clear nail polish, and stored at 4°C for preservation. The negative control sections were incubated with only secondary antibodies. There were six mice in each of the three groups. The antibody information is listed in Supplementary Tables 1 and2.
In our study, omission of the primary antibody and incubation of the sections only with secondary antibodies was used to con rm the speci city of the different secondary antibodies.
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