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α tubulin dm1α

Manufactured by Merck Group

α-tubulin (DM1α) is a protein that plays a crucial role in the formation and structure of microtubules, which are essential components of the cytoskeleton in eukaryotic cells. This protein is commonly used as a marker for the visualization and study of microtubules in various research applications.

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3 protocols using α tubulin dm1α

1

Cohesin Complex Protein Identification

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Primary antibodies for immunoblotting were FLAG (M2) from Sigma Aldrich; STAG2 (J-12; carboxyl-terminus epitope), STAG1 (A-9), RAD21 (B-2), SMC3 (E-3), SMC1A (M-16), WAPL (A-7), and PDS5A (S-20) from Santa Cruz Biotechnology; and PDS5B (A300-537A) and STAG2 (A302-580A; amino terminus epitope) from Bethyl Laboratories. Antibodies and conjugated beads for immunoprecipitation were FLAG-M2 beads from Sigma Aldrich, SMC3 (A300-060A) from Bethyl Laboratories, and Streptavidin Plus UltraLink Resin from Pierce. Antibodies for immunofluorescence were anti-centromere antibody (ACA) from Geisel School of Medicine, α-tubulin (DM1α) from Sigma Aldrich, and Alexa Fluor 488 and 568 from Molecular Probes.
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2

Antibody Selection for Immunoblotting and ChIP-Seq

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The following antibodies were used for immunoblots: Pol II CTD Ser-2 (cat# 04-1571, 1:1000), Ser-5 (cat# 04-1572, 1:5000), and Ser-7 (cat# 04-1570, 1:1000) phosphoantibodies (Millipore); Total Pol II (Santa Cruz cat# sc-899, 1:500); CDK7 (Santa Cruz cat# sc-723, 1:500); CDK9 (Bethyl cat# A303-493A, 1:1000); CDK12 and CDK13 (Arno Greenleaf, 1:1000); cyclin K (Bethyl cat# A301-939A, 1:500); cyclin H (Bethyl cat# A301-674A, 1:1000); PARP (Cell Signaling cat# 9542, 1:1000); and α-Tubulin DM1α (Sigma cat# T9026, 1:5000). The following ChIP-grade antibodies were used for ChIP-seq (10 µg each): Pol II (Santa Cruz cat# sc-899); CDK12 (gift of Arno Greenleaf); Pol II CTD Ser-2 (Millipore cat# 04-1571); and H3K27Ac (Abcam cat# AB4729).
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3

Quantifying DNA Damage and Mitotic Spindle Abnormalities

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After drug treatment, cells were trypsinized, washed once with PBS, centrifuged at 500 rpm for 5 min using a cytospin (Thermo Fisher Scientific, Waltham, MA) and seeded onto poly-l-lysine (PLL)-coated coverslips. The cells were then fixed with 4% para-formaldehyde for 20 min, blocked in 2% BSA/PBS for 30 min, and incubated in primary anti-pH3 and anti-γH2AX antibody overnight (4°C). Cells were then washed three times in 2% BSA/PBS, incubated in Alexa Fluor 488 and Alexa Fluor 594 secondary antibodies for 1 hour at room temperature. DAPI was added to stain nuclei. Cells were imaged on an upright fluorescence microscope (Nikon, Melville, NY), and the data was analyzed using FociCounter (Anna Jucha, University of Wrocław, Poland). Cells were scored based on whether they harbor ≥10 γH2AX foci.
For multipolar and monopolar mitotic spindles staining, cells were washed with PBS and fixed with cold methanol for 20 min at −20°C, followed by incubation with primary antibodiesmin including Cep192 (SPD-2, A. Dammermann, K. Oegema Lab) and α-tubulin (DM1α, Sigma). Images were recorded on a Deltavision microscope at 1 × 1 binning with a 100× NA 1.3 U-planApo objective. Z-stacks (0.2 μm sections) were deconvolved using softWorRx (Applied Precision) and maximum intensity projections were imported into Adobe Photoshop CS4 (Adobe) for analysis.
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