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5 protocols using anti flag monoclonal antibody

1

Co-Immunoprecipitation of HA-tagged Nrd and FLAG-tagged Pin1

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HA-tagged Nrd were co-transfected either with FLAG-tagged zebrafish Pin1 or FLAG-vector control. Cell lysates were collected in mammalian cell lysis buffer (50 mM Hepes pH 7.4; 10% glycerol; 1% Triton X-100; 100 mM NaCl and 0.5 mM MgCl2) supplemented with protease and phosphatase inhibitors. Supernatants were incubated with FLAG-M2 beads (Sigma) for 1.5 h at 4°C. Bound proteins were eluted by 2 × SDS loading dye. The samples were analyzed on SDS-PAGE and Western blotting with polyclonal anti-HA antibody (Zymed) and monoclonal anti-FLAG antibody (Santa Cruz Biotechnology).
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2

Affinity Purification of GFP-FLAG Fusion Proteins

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Lysates from HEK293 cells transfected with different GFP- and FLAG-tagged fusion proteins were incubated for 3 h at 4°C with 6 µg of monoclonal anti-FLAG antibody, 3 µg of rabbit anti-FLAG antibody, mouse anti-GFP antibody, and nonimmune mouse and rabbit IgG (Santa Cruz Biotechnology, Inc.) prebound to protein A/G–agarose (5 h, 4°C; Santa Cruz Biotechnology, Inc.). Lysate preparation, matrix coating, binding, and washing were performed in lysis buffer containing 75 mM NaCl (for syndapin I–ProSAP1 coimmunoprecipitation) and 100 mM NaCl (for syndapin I/syndapin I coimmunoprecipitation). Coimmunoprecipitated proteins were analyzed by immunoblotting using rabbit polyclonal anti-FLAG antibodies, rabbit polyclonal and mouse monoclonal anti-GFP antibodies, and rabbit anti–syndapin I antibodies.
Several independent experiments were conducted to reproduce data.
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3

Cloning and Expression of FMDV Proteins

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The cDNA of porcine RIG-I were amplified from PK-15 cells and cloned into pcDNA3.1/myc-His(−)A vector (Invitrogen) to yield the Myc-tagged expression construct (Myc-RIG-I). Each of FMDV full-length viral cDNA was inserted into p3xFLAG-CMV-7.1 vector (Sigma-Aldrich) to construct plasmids expressing Flag-tagged viral proteins. A series of Flag-tagged truncated 2B constructs were generated by site-directed mutagenesis PCR. All constructed plasmids were analyzed and verified by DNA sequencing. The IFN-β promoter luciferase reporter plasmids and various hemagglutinin (HA)-tagged plasmids used in this study were kindly provided by Hongbing Shu (Wuhan University, China) (25 (link)). The commercial antibodies used in this study include: anti-Myc monoclonal antibody (Santa Cruz Biotechnology), anti-Flag monoclonal antibody (Santa Cruz Biotechnology), anti-Flag polyclonal antibody (Sigma-Aldrich), anti-RIG-I polyclonal antibody (Abcam), anti-HA tag antibody (BioLegend), anti-eukaryotic translation initiation factor 4 gamma (eIF4G) polyclonal antibody (Abcam), and anti-β-actin monoclonal antibody (Santa Cruz Biotechnology). Anti-VP1 polyclonal antibody was prepared by our laboratory (unpublished data).
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4

Cloning and Mutagenesis of PABPC1 and SVV 3C

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The cDNA of human PABPC1 was amplified from HEK293T cells and cloned into pcDNA3.1(+)-FLAG vector (Invitrogen, Carlsbad, CA, USA) to yield the N terminal FLAG-tagged expression construct (FLAG–PABPC1). The FLAG–PABPC1 mutant (Q437N) was generated using a specific primer, as described previously [30 (link)]. The FLAG-tagged SVV 3Cpro construct and 3Cpro mutants (H48A, C160A, H48A-C160A) without protease activity were prepared in our laboratory [17 (link)]. All constructed plasmids were analyzed and verified by DNA sequencing.
The commercial antibodies used in this study included: anti-FLAG monoclonal antibody (Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-FLAG polyclonal antibody (Sigma–Aldrich, St. Louis, MO, USA)anti-PABPC1 polyclonal antibody (Abcam, Cambridge, MA, USA), anti-puromycin monoclonal antibody (Merck & Co., Kenilworth, NJ, USA), and anti-β-actin monoclonal antibody (Santa Cruz Biotechnology). Anti-VP1 polyclonal antibody was prepared in our laboratory [17 (link)].
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5

Myc-tagged DDX1 Expression Construction

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A Myc-tagged expression construct was generated by inserting the cDNA of porcine DDX1 into the pcDNATM3.1/myc-His(–)A vector (Invitrogen, Carlsbad, CA, USA).
The commercial antibodies used in this study include an anti-Myc monoclonal antibody (Santa Cruz Biotechnology, Dallas, TX, USA), an anti-FLAG monoclonal antibody (Santa Cruz Biotechnology), an anti-IRF3 monoclonal antibody (Cell Signaling Technology, Beverly, MA, USA), an anti-P-IRF3 monoclonal antibody (Cell Signaling Technology), an anti-DDX1 polyclonal antibody (Abcam, Cambridge, MA, USA), and an anti-β-actin monoclonal antibody (Santa Cruz Biotechnology). An anti-VP1 polyclonal antibody was prepared in our laboratory (Li et al.2017 (link)). Anti-3D polyclonal antibody (500 μg/mL) was produced in rabbit by immunization with FMDV 3D protein.
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