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29 protocols using pro prep protein extraction kit

1

Cytotoxicity Assay of Cancer Cell Lines

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Cancer cell lines were purchased from American Type Culture Collection (ATCC, Rockville, MD, USA). Methanol used for extraction was obtained from Honeywell (Germany), while DSMO, MTT and trypan blue dye were purchased from Sigma (St. Louis, Mo., USA). Fetal Bovine serum, RPMI-1640, HEPES buffer solution, Lglutamine, gentamycin and 0.25% Trypsin-EDTA were purchased from Lonza (Belgium). PRO-PREP protein extraction kit was purchased from iNtRON Biotechnology (Korea). Anti-Bcl-2, anti-Bax and anti-cleaved caspase-3 were purchased from Cell Signaling Technology (MA, USA), while anti-p53 was obtained from Abcam and anti-β-actin was obtained from Sigma (St. Louis, Mo., USA).
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2

Protein Expression Analysis in Larval Samples

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Total protein from third instar larvae extracted by homogenization with (PRO PREP) protein extraction kit (INTRON Biotechnology, Korea). Samples subjected to 1x SDS-PAGE loading buffer and separated by 12% SDS-PAGE. Then transferred to a polyvinylidene fluoride (PVDF) membrane for immunoblotting. Membranes blocked in 5% non-fat dry milk in TBST (0.05% Tween, 20–50 mmol/L Tris HCL, pH 7.5 and 150 mmol/L NaCl) for 3 h, and incubated overnight with primary antibody at 4 °C and washed with TBST for 2 h. Secondary goat anti-rabbit IgG (HRP) incubated with membranes at RT for 3 h. After incubation, samples washed with TBST for 2 h. Finally, membranes visualized on X-ray films. Densitometry analysis of individual protein bands performed using Quantitative One Image software.
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3

Corpus Callosum Protein Extraction

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Nine anesthetized mice were transcardially perfused with ice-cold phosphate-buffered saline (PBS). Brains were removed and one half was placed in a brain tissue matrix and sectioned to obtain three 1mm-thick coronal blocks. The corpus callosum was separated from the other half under a microsope as shown in supplementary Figure I, frozen in dry ice and stored at −80°C. For western blot lysates from the corpus callosum region were ultrasonically homogenized in 100–200μl PRO-PREP Protein Extraction Kit (iNtRON Biotechnology). Samples were tested for anti-PDGFR-α, anti-CD31, myelin basic protein (MBP) or anti-β-actin as described in supplementary material.
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4

Assessing Cellular Stress Signaling

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The effect of HFPS on the expressions of NF-κB, p-c-Jun, and MAPKs were assessed by Western blot analysis performed as described previously [43 (link),47 (link)]. In brief, cells were pretreated with HFPS and irradiated with UVB. After 1 h (for MAPKs assay) or 6 h (for NF-κB and p-c-Jun assay) incubation, cells were harvested. Proteins were extracted with the PRO-PREP protein extraction kit (iNtRON Biotechnology, Sungnam, Korea). The protein level of each sample was measured by a BCA™ kit. Total proteins (50 μg) were separated on 10% sodium dodecyl sulfate (SDS)-polyacrylamide gels and transferred to pure nitrocellulose membranes. Membranes were blocked with 5% skim milk for 3 h at room temperature and incubated with primary antibodies overnight at 4 °C. After washing with TBS-T buffer, membranes were incubated with secondary antibodies for 3 h at room temperature. Finally, the protein bands were visualized using an ECL western blotting detection kit and exposed on X-ray films.
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5

Adipose Tissue Protein Extraction and Analysis

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Total protein was extracted from samples of adipose tissue and isolated cells using a PRO-PREP Protein Extraction Kit (iNtRON Biotechnology, Kyungki-Do, Korea, 01434/40116). Aliquots containing 50 mg protein were separated by 8% SDS-PAGE. The primary antibodies were total or phosphorylated AKT (Ser473) (p-AKT), iNOS, Arg-1, PPARγ, total or phosphorylated STAT6 (Tyr641) (p-STAT6), and total or phosphorylated STAT3 (Tyr705) (p-STAT3). Total or phosphorylated AKT (Ser473) (p-AKT) (4685s and 4060s), total or phosphorylated STAT6 (Tyr641) (p-STAT6) (ab32520 and ab28829), and total or phosphorylated STAT3 (Tyr705) (p-STAT3) antibodies (12640S and 9145S) were from Cell Signaling Technology; iNOS (ab 15323) and Arg-1 (Ab60176) antibodies were from Abcam; and PPARγ antibodies (sc-7273) were from Santa Cruz Biotechnology. Goat anti-rabbit (ZB-2301), goat anti-mice (ZB-2305), and rabbit anti-goat IgG (ZB-2306) secondary antibodies were used. Blots were analyzed using ImageJ software (NIH, MD, USA).
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6

Angiopoietin-Tie2 Signaling Analysis

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As described previously (Kang et al. 2013 (link)), cells were trypsinized and lysed by Pro-Prep protein extraction kit (iNtRON Biotechnology, Seongnam, Korea). Equal amounts of protein extracts (20 &g) were separated by sodium dodecyl sulfate–polyacrylamide gel electro­phoresis and transferred to a nitrocellulose membrane (Invitrogen). Blots were blocked with 5% nonfat dry milk at room temperature. The blots were incubated with antibodies specific for angiopoietin-1 (ab183701, Abcam), angiopoietin-2 (ab155106, Abcam), phosphorylated Tie2 (Tyr992, #4221, Cell Signaling Technology), Tie2 (sc-9026), thrombospondin-1 (sc-59886) and &-actin (Santa Cruz Biotechnology) at specific dilution, followed by incubation with peroxidase-labeled secondary antibodies. Immunoreactive proteins were visualized using an enhanced chemiluminescence detection kit (Santa Cruz Biotechnology). Blot images were captured using ImageQuant LAS 4000 biomolecular imager (GE Healthcare Life Sciences). Blot intensities were quantified using ImageJ 1.48v software (http://imagej.nih.gov/ij) (Schneider et al. 2012 (link)).
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7

Protein Extraction and Western Blotting

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Protein from tissues were extracted by first mincing the tissue using a PT1200 Polytron (Kinematica, Switzerland) in RIPA buffer. Cells in culture were lysed on ice using the Pro-prep protein extraction kit (Intron Biotechnology, Korea). Proteins (10–20 μg per lane) were then run on 10% polyacrylamide gels and proteins transferred to PVDF membranes (Invitrogen). Membranes were then blocked for 1 h in PBS containing 5% skim milk and 0.2% Tween-20 and then incubated overnight with primary antibodies to AWAT2 (H00158835–B01P, Abnova, Taiwan), SOX9 (Abcam, Cat# ab185966), P63 (Abcam, Cat# ab124762), and PCNA (Thermofisher, Cat# PA5-27214). Antibody-reactive proteins were detected with the appropriate HRP-conjugated secondary antibodies and an enhanced chemiluminescent substrate (SuperSignal West Pico Chemiluminescent Substrate, Thermos scientific). Immunostained bands were imaged and analyzed with ChemiDoc MP (Bio-Rad) and relative quantitation was done after normalization to GAPDH bands in the same blots.
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8

Western Blot Analysis of Protein Expression

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Cells were rinsed twice with ice-cold PBS, and the cells were collected into cell lysis buffer (Pro-PREP™ Protein Extraction Kit, iNtRON Biotechnology). After the protein concentrations were quantified and adjusted to the same concentrations by adding PBS, samples were mixed with equal volumes of sample buffer containing 91% SDS (Novex) and 9% 2-mercaptoethanol (Sigma). Subsequently, samples were heated at 95°C for 5 min, and each sample was loaded onto 4–20% Tris–glycine gels. After electrophoresis and transferring to nitrocellulose membranes (Novex), the membranes were blocked in Tris buffered saline with 0.1% Tween 20 (TBS-T) containing 5% nonfat dry milk for 60 min at room temperature. Membranes were then incubated overnight at 4°C with myelin basic protein (MBP) antibody (1:500, Thermo Scientific), Akt antibody (1:1000, Cell Signaling), phosphorylated Akt (Ser473) antibody (1:1000, Cell Signaling), or anti-β-actin antibody (1:10000, Sigma Aldrich) followed by incubation with peroxidase-conjugated secondary antibodies and visualization by enhanced chemiluminescence (Amersham).
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9

Mangiferin Protein Extraction and Detection

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Total cell extracts were prepared using PROPREP protein extraction kit (iNtRON Biotechnology, Sungnam, Republic of Korea). Cytoplasmic and nuclear extracts were prepared using NE-PER nuclear and cytosolic extraction reagents (Pierce, Rockford, IL). Briefly, after treatment with the indicated concentrations of mangiferin, cells were harvested, washed once with ice-cold PBS, and gently lysed for 15 min in 100 μl ice-cold PRO-PREP lysis buffer. Lysates were centrifuged at 14,000 g for 10 min. Supernatants were collected and protein concentrations determined using a Bio-Rad protein assay kit (Bio-Rad, Hercules, CA). The samples were stored at −80℃ or immediately used for western blot analysis. The proteins were separated on sodium dodecyl sulfate (SDS)-polyacrylamide gels and transferred to nitrocellulose membranes (Schleicher & Schuell, Keene, NH). Proteins were detected using an enhanced chemiluminescence detection system (Amersham, Arlington Heights, IL).
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10

UVA Irradiation and PA Treatment Effects

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The cells were irradiated with UVA and treated with PA at the indicated concentrations (0–2 μg/mL). Cells were washed with cold PBS twice and harvested. Next, proteins were extracted with the PRO-PREP protein extraction kit (iNtRON Biotechnology, Sungnam, Korea). The protein contents of total cell lysate were measured by using the BCATM protein assay kit (Sigma-Aldrich, St. Louis, MO, USA). The samples containing equal protein contents were loaded on 15% sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) and separated by electrophoresis, then transferred to a nitrocellulose membrane. At the blocking step, the membrane was blocked in 5% nonfat dry milk in TBST (25 mM Tris–HCl, 137 mM NaCl, 2.65 mM KCl, 0.05% Tween 20, pH 7.4) for 2 h. The 1:1000 dilutions of different primary antibodies in 5% nonfat dry milk solutions were individually incubated overnight at 4 °C. Thereafter, the membranes were washed and incubated with 1:3000 dilution secondary antibodies for 2 h at room temperature. All protein bands were developed using an ECL western blotting detection kit. The relative expressions of all proteins were analyzed by using the Image J program (Wayne Rasband, National Institutes of Health, Bethesda, MD, USA).
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