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116 protocols using p stat5

1

Signaling Dynamics in FDH Cells

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FDH cells expressing βc and WT or P248L IL3Rα were stimulated with 100 ng/mL IL3 for specified time points up to 60 minutes before lysis with NP-40 lysis buffer [1% NP-40 (v/v), 150 mmol/L NaCl, 50 mmol/L Tris-HCl pH 8.0, and 10% glycerol (v/v)] for 20 minutes on ice. Lysates were cleared by centrifugation and immunoblotted with antibodies for pJAK1 (Cell Signaling Technology #3331, RRID: AB_2265057), pJAK2 (Cell Signaling Technology #3771, RRID: AB_330403), pSTAT1 (Tyr701; BD #612233, RRID: AB_399556), pSTAT5 (Cell Signaling Technology #9359, RRID: AB_823649), STAT1 (BD #610185, RRID: AB_397584), pSHC (Cell Signaling Technology #2434, RRID: AB_10841301), SHC (Upstate Biotechnology, Inc., #06-203, RRID: AB_310070), pβcY593 (87 (link)), βc (84 (link)), and Actin (Chemicon International, Inc., #MAB1501, RRID: AB_2223041) and goat anti-rabbit (Invitrogen #31463, RRID: AB_228333) or goat anti-mouse (Invitrogen #31437, RRID: AB_228295) IgG Fc secondary antibodies. Immunoblots were analyzed using chemiluminescence on a Bio-Rad Chemidoc Touch.
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2

Immunoblot Analysis of STAT Proteins

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Immunoblots were prepared as described41 (link) using Abs for STAT3 (79D7, #4904), pSTAT3 (Y705, #9145), STAT5 (#9363), pSTAT5 (Y694, 9351), pSTAT1 (Y701, #9171), β-actin (#4967) (Cell Signaling Technology, Danvers, MA, USA), or STAT1 (#610185) (BD Transduction Labs, San Jose, CA, USA). Following incubation with horseradish peroxidase-conjugated secondary Ab, immune complexes were detected via SuperSignal® West Pico Chemiluminescent Substrate (Thermo Scientific, Waltham, MA, USA).
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3

Western Blotting of Phosphorylated STAT Proteins

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One snap-frozen proliferating and one involuted IH tissue samples from the original cohort of patients used for DAB IHC staining were used for Western blotting (WB). These tissue samples were processed as previously described (3 (link)) and transferred to nitrocellulose membranes (Thermo Scientific) using an iBlot 2 (Thermo Scientific). The membranes were blocked for 90 min at 4°C in 1x iBind™ Flex Solution (Thermo Scientific) and probed using an iBind™ Flex device (Thermo Scientific) with the following primary antibodies: pSTAT1 (1:1,000; cat# 9167, Cell Signaling Technology, Danvers, MA, USA), pSTAT3 (1:1,000; cat# 9145, Cell Signaling Technology), pSTAT5 (1:1000; cat# 9314, Cell Signaling Technology) and β-actin (1:2,000; cat# ab8226, Thermo Scientific). Detection and imaging of the blots were undertaken as routinely done in our laboratory (3 (link)). Human tonsil, mouse lung, and human liver total protein extracts were used as the positive controls for pSTAT1, pSTAT3, and pSTAT5, respectively.
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4

Temporal Signaling Dynamics in C2C12 Myotubes

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Four-day differentiated C2C12 myotubes were treated at the time points indicated, washed twice in 1X PBS (Thermo Fisher Scientific), and lysed in radioimmunoprecipitation assay (RIPA) buffer (MilliporeSigma) on ice for 30 minutes. Cells were then scraped into 1.7mL Eppendorf tubes, centrifuged at 9000× g for 10 minat 4 °C, and supernatant collected. Protein lysates were quantified by BCA assay (Thermo Fisher Scientific) according to the manufacturer’s instructions. Equal amounts of protein were separated by SDS-PAGE (4%–15% TGX stain-free gel Bio-Rad, Hercules, CA, USA), and proteins transferred using the trans-blot turbo transfer system (Bio-Rad). The nitrocellulose membranes were probed with the following antibodies from Cell Signaling (Danvers, MA, USA), according to established Western blot protocols: p-STAT3 (#9145), STAT3 (#9139), p-STAT5 (#9351), STAT5 (#94205), p-SMAD2 (#3104), p-SMAD3 (#9520), SMAD2/3 (#8685), p-ERK1/2 (#4370), ERK1/2 (#4695), IκBα (#4814), p-p38 (#9216), p38 (#9212), and GAPDH (#2118). The secondary signal was quantified by fluorescence using a LI-COR Odyssey® imager (LI-COR Biosciences, Lincoln, NE, USA), and the signal was normalized to a GAPDH loading control.
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5

Whole Cell Protein Extraction and Western Blotting

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For whole cell protein extracts, cells were collected and lysed with RIPA buffer (Boston Bioproducts, Ashland, MA). Protein was quantitated using the BCA assay (Pierce, Rockford, IL). Lysates were electrophoretically separated using 12% Tris HCl gels (Biorad, Hercules, CA) and transferred to nitrocellulose membranes. Western blotting was performed using antibodies specific for the following proteins: pSTAT5, STAT5, pAkt, Akt, p56lck, phosphor-p56lck, pErk1/2, Erk1/2, pFoxO1/FoxO3a, FoxO1, GATA-1 (all from Cell Signaling Technologies, Danvers, MA), NFATc1, goat anti-rabbit IgG-HRP, and goat anti-mouse IgG-HRP. Average densitometric ratio was calculated for each blot by normalizing to an actin loading control using Image J software.
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6

Quantitative Western Blot Analysis of Signaling Pathways

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Western blot was performed as previously described (4 (link)). Antibodies against FAK (cat#13009s), p-STAT5
(cat#9351s), STAT5 (cat#9363s), p-AKT (cat#4060s), AKT (cat#2920s), BCL-XL
(cat#2764s), p-ERK (cat#4370s), 4EBP1 (cat#9644), and p-4EBP1 (cat#2855) were
purchased from Cell Signaling Technology (Danvers, MA). Antibodies against MCL-1
(cat#sc-819) and BCL-2 (cat#M0887) were purchased from Santa Cruz Biotechnology
(Santa Cruz, CA) and DAKO (Carpentaria, CA), respectively. β-actin or
α-tubulin was used as a loading control. Signals were detected using the
Odyssey Infrared Imaging System (LI-COR Biosciences, Lincoln, NE) and quantified
using Odyssey software (version 3.0, LI-COR Biosciences).
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7

Western Blot Analysis of Protein Targets

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Western blots were performed as previously described [21] (link), using the following antibodies detecting: Akt (cat.# 4691, Cell signalling, dilution 1:1000), Dnmt1 (cat.# ab188453, Abcam; dilution 1:500), Dnmt3a (cat.# SC-20703, Santa Cruz; dilution 1:1000), Dnmt3b (cat.# PA1–884, Thermo Fisher; dilution 1:1000), Stat3 (cat.# SC-8019, Santa Cruz; dilution 1:500), P-Stat3 (cat.# 9145, Cell signalling, dilution 1:1000), Stat5 (cat.# 25656, Cell signalling, dilution 1:1000), P-Stat5 (cat.# 9359, Cell signalling, dilution 1:1000), mouse c-Met (cat.# SC-8057; Santa Cruz; dilution 1:500), c-Myc (cat.# SC-40, Santa Cruz; dilution 1:1000), Hsc-70 (cat.# SC-7298, Santa Cruz; dilution 1:10000), Lin28b (cat.# SC-293120, Santa Cruz; dilution 1:500), h-Ras (cat.# SC-520, Santa Cruz, dilution 1:1000) and β-actin (cat.# SC-130657, Santa Cruz; dilution 1:1000).
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8

Western Blot Analysis of Signaling Proteins

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Cells were lysed in RIPA buffer containing protease inhibitors and protein lysates were subjected to SDS–PAGE and immunoblot analysis as previously described [34 (link)]. Antibodies used include pSTAT5 (Cell Signaling #9314, 1:1000), total STAT5 (Cell Signaling #9363, 1:1000), β-tubulin (Cell Signaling # 2146S, 1:1000), pFAK Y397 (Cell Signaling, # 3283S, 1:1000), and total FAK (Cell Signaling #3285S, 1:1000).
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9

Protein Isolation and Immunoblotting from Tissues

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Protein from snap frozen tissues was isolated as before[49 (link)]. Protein from cell pellets was isolated by pipetting in NP-40 cell lysis buffer (Life Technologies) containing 1% PMSF, incubating on ice for 30 minutes, and removing cleared lysate. Antibodies were purchased from Cell Signaling Technology (p-KIT, Y719, #3391; KIT, D13A2, #3074; p-AKT, Ser473, #4060; AKT, 11E7, #4685; p-S6, S235/236, #2211; S6, 5G10, #2217; p-ERK, T202/Y204, #4370; ERK1/2, #4695; p-STAT5, Tyr694, #9359; STAT5, D2O6Y, #94205; p-STAT3, Y705, #9145; STAT3, 79D7, #4904; p-Tyrosine, p-Tyr-1000, #8954; GAPDH, #5174).
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10

Protein Extraction and Western Blot Analysis

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Whole-cell Brij protein lysis, nuclear and cytosolic protein extractions, and Western-blot analyses were performed as described [46] (link), [65] (link). Antibodies used for detection of the respective proteins and their relevant dilutions were: pSTAT5 (#9351, Cell Signaling Technology; 1∶1000), STAT5A (L-20, sc-1081, Santa-Cruz Biotechnology; 1∶1000), STAT5B (G-2, sc-1656, Santa-Cruz Biotechnology; 1∶200), STAT5A+B (C-17, sc-835, Santa-Cruz Biotechnology; 1∶1000), pJAK2 (Cell Signaling Technology, #3771; 1∶200), JAK2 (#3230, Cell Signaling Technology; 1∶500), α-tubulin (DM1A, sc-32293, Santa-Cruz Biotechnology; 1∶200), Anti-Rabbit IgG-Peroxidase (SIGMA A0545; 1∶10,000), Anti-Mouse IgG-Peroxidase (SIGMA A8924; 1∶10,000). Apparent molecular weight of detected proteins was as predicted by the antibody manufacturers, i.e. 125 kDa for JAK2, 90 kDa for STAT5 (with STAT5A running slightly slower than STAT5B in SDS-PAGE, as confirmed by the STAT5A+B immunoblots) and 55 kDa for α-tubulin. Chemoluminescence detection was performed using Amersham ECL Prime (RPN2232, GE Healthcare Life Sciences) or SuperSignal West Femto (34095, Thermo Fisher Scientific) for weaker signals, and images were captured on an ImageQuant LAS 4000 mini imaging system (GE Healthcare Life Sciences). Immunoblots shown are representative of at least three independent experiments.
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