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Phenylmethylsulfonyl fluoride pmsf

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Phenylmethylsulfonyl fluoride (PMSF) is a serine protease inhibitor commonly used in biochemistry and molecular biology laboratories. It functions by irreversibly binding to and inhibiting the activity of serine proteases, which are enzymes that cleave peptide bonds. PMSF is often utilized in the purification and stabilization of proteins to prevent unwanted proteolysis.

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200 protocols using phenylmethylsulfonyl fluoride pmsf

1

Urinary Biomarkers in Kidney Disease

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The levels of VDBP (vitamin D binding protein) and MCP-1 (macrophage chemoattractive protein-1) were measured in urine samples, and the levels of IL-1β were measured in renal tissue samples. The VDBP and MCP-1 content were quantified in urine samples collected from the urinary bladder treated with 1 mM phenylmethylsulfonyl fluoride (PMSF; Sigma Chemical Co, St. Louis, Missouri, USA), and then the samples were stored at −70 °C until analysis. The contents were determined using ELISA kits according to the manufacturer’s guidelines (Alpco, Keewaydin Drive, Salem, USA; Pierce, Rockford, USA; and R&D Systems Inc., Minneapolis, USA, respectively). The values of VDBP and MCP-1 were expressed as ng/mg of creatinine and IL-1β as pg/mg of protein.
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2

Cannabinoid Signaling Pathway Compound Acquisition

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AA-5HT, 2-AG, AM-251, AM-630, OEA, PEA and URB597 were obtained from Biomol GmbH (Hamburg, Germany). AEA was purchased from Enzo Life Sciences GmbH (Lörrach, Germany). Dimethyl sulfoxide (DMSO), ethylenediaminetetraacetic acid (EDTA), glycerol, glycine, hydrogen peroxide (H2O2), sodium chloride (NaCl), Tris hydrocloride (Tris-HCl) and Tris ultrapure were obtained from AppliChem (Darmstadt, Germany). 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES) was bought from Ferak (Berlin, Germany). Aprotinine, bovine serum albumin, capsazepine, HCl, leupeptine, luminal, orthovanadate, para-coumaric acid, para-formaldehyde, phenylmethylsulfonyl fluoride (PMSF) and Triton® X-100 were from Sigma (Taufkirchen, Germany). Dulbecco's modified eagle medium (DMEM) with 4.5 g/l glucose and with L-glutamine was provided by Lonza (Cologne, Germany). Fetal calf serum (FCS) and penicillin-streptomycin were purchased from Invitrogen (Darmstadt, Germany) and phosphate-buffered saline (PBS) was provided by PAN Biotech (Aidenbach, Germany). Milk powder was obtained from Bio-Rad Laboratories GmbH (Munich, Germany). Acrylamide (Rotiphorese® Gel 30) was obtained from Carl Roth GmbH (Karlsruhe, Germany). Pure standards for LC-MS analysis of AEA, 2-AG, OEA, PEA and AEA-d8 were purchased from Cayman Chemical (Ann Arbor, MI, USA).
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3

Protein Extraction and Immunoblotting Protocol

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Mock-treated and treated WT and atg5−/− MEFs were washed using phosphate-buffered saline (PBS) and lysed by adding cell lysis buffer (50 mM Tris-HCl [pH 7.5], 150 mM NaCl, 1% Triton X-100, a protease inhibitor cocktail [catalog number P8340; Sigma], and phenylmethylsulfonyl fluoride [PMSF] [CAS number 329-98-6; Sigma]). Protein estimation was done using the micro-BCA assay (catalog number 23225; Pierce). The lysate was mixed with 4× Laemmli buffer (6% SDS, 40% glycerol, 0.04% bromophenol blue, 20% β-mercaptoethanol, 0.25 M Tris [pH 6.8], and water) and further boiled for 10 min at 95°C. Equal amounts of cellular protein were loaded onto and separated on polyacrylamide gels and later transferred to a polyvinylidene difluoride (PVDF) membrane (Immobilon-P, catalog number IPVH00010; Merck Millipore) for immunoblotting. Band intensities were quantitated by using ImageJ software. Data are presented as mean values ± standard deviations (SD) obtained from 3 independent experiments.
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4

Affinity-purified FLAG antibody protocol

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An affinity-purified monoclonal anti-FLAG antibody, leupeptin, aprotinin, phenylmethylsulfonyl fluoride (PMSF), and sodium vanadate were obtained from Sigma Chemical Co. (St. Louis, MO) and anti-pAKT, AKT, phosphorylated ERK1/2, ERK1/2, and RasGRP3 antibodies were obtained from Cell Signaling Technology (Beverly, MA). Anti-Ras and anti-Rap1 antibodies were purchased from BD Biosciences (San Jose, CA). The AKT kinase-dead mutant vector was obtained from Addgene. The H-Ras dominant negative mutant vector was a gift from Professor Raymond Mattingly from Wayne State University (Detroit, MI). The pFLAG-RasGRP3 with an N-terminal FLAG tag was described previously [48 (link)].
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5

Sorafenib and HDAC Inhibitor Combination Therapy

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Sorafenib (purity ≥ 99%) was purchased from Biovision. MPT0E028 and vorinostat (purity ≥ 98%) were synthesized by Dr. Jing-Ping Liou's Laboratory (Taipei Medical University, Taipei, Taiwan; ref. 13 (link)). EGTA, EDTA (disodium salt), leupeptin, dithiothreitol, propidium iodide, MTT, phenylmethylsulfonylfluoride (PMSF), ribonuclease A, z-VAD– FMK, Ac-DEVD–CHO, PD98059, PD173074, and all of the other chemical reagents were obtained from Sigma. RPMI-1640 medium, Dulbecco's Modified Eagle Medium (DMEM), FBS, penicillin, streptomycin, and all other tissue culture regents were obtained from GIBCO/BRL Life Technologies. The following antibodies were used: caspase-8, caspase-9, p21, histone H3, acetyl-a-tubulin, phospho-Erk, and Erk (Cell Signaling Technology); Mcl-1, PARP, and FGFR3 (Santa Cruz Biotechnology); acetyl-histone H3 and pan-actin (Millipore); caspase-3 (Imgenex); phospho-Stat3- Tyr705 and phospho-Stat3-Ser727 (Epitomics); and Stat3 (BD Biosciences).
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6

Western Blot Analysis of Cellular Proteins

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The transfected or virus-infected cells were lysed in lysis buffer (50 mM Tris-HCl [pH 7.5], 100 mM NaCl, 0.5% Triton X-100, 10% glycerol, 1 mM EDTA) supplemented with a proteinase inhibitor (20 nM phenylmethylsulfonyl fluoride [PMSF]; Sigma-Aldrich). Cells lysis supernatants were measured and boiled in the buffer for 10 min. Equal amounts of extracts were separated with SDS-PAGE and transferred to methanol-activated polyvinylidene difluoride (PVDF) membranes (Millipore). Membranes were blocked with 5% skimmed milk in 1× TBST (Tris-buffered saline with 0.05% Tween 20) for 1 h and incubated overnight at 4°C with an antibody against Nat9 (1:12,000), PRRSV Nsp2 (1:2,000), or PRRSV N (1:1,000) or with labeled Abs (1:2,000). This was followed by washing and incubation with HRP-conjugated antibody for 1 h at room temperature. Immunodetection was completed using Pierce enhanced chemiluminescence (ECL) Western blotting substrate (Thermo Fisher Scientific).
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7

Phospho-ERK 1/2 and Phospho-Akt Quantification

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For phospho-ERK 1/2 and phospho-Akt determination, cells were serum-starved and treated as described. Cells were then collected and lysed by adding RIPA buffer with sodium orthovanadate (10 µL/mL, Sigma), Phenylmethylsulfonyl fluoride (PMSF) (10 µL/mL), aprotinin (20 µL/mL), and NaF 50 mM (all from Sigma). Cell extracts were resolved on 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and electro blotted onto a nitrocellulose membrane (Trans-Blot Transfer Medium 0.2 µm, BioRad Laboratories, Madrid, Spain). Primary antibodies against Akt (dilution 1:1000), phospho Akt (dilution 1:1000), ERK 1/2 (dilution 1:10,000), phospho ERK 1/2 (dilution 1:1000) (all from Cell Signaling Technology), and glyceraldehyde 3-phosphate dehydrogenase (GAPDH) (Santa Cruz Biotechnology, Heidelberg, Germany; dilution 1:5000) were applied overnight at 4 °C or 4 h at room temperature. Immunoreactive bands were detected with a western-light chemiluminescence detection system (ECL, APBiotech, Little Chalfont, UK) and photographed (HyperfilmECL, APBiotech, IBM, Madrid, Spain). Band density was evaluated with the Image J software.
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8

VEGF-induced Cell Proliferation Assay

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Recombinant human VEGF, thiazolyl blue tetrazolium bromide (MTT), 5-bromo-4-chloro-3-indolyl phosphate/nitro blue tetrazolium (BCIP/NBT), phenylmethylsulfonyl fluoride (PMSF), and 4-(2-Aminoethyl) benzenesulfonyl fluoride hydrochloride (AEBSF) were purchased from Sigma-Aldrich Corporation (St. Louis, MO, USA). RIPA buffer and chemiluminescent substrate were obtained from Cell Signaling Technology, Inc. (Beverly, MA, USA). Dimethyl sulfoxide, sodium fluoride (NaF), and bovine serum albumin (BSA) were from Wako Pure Chemical Industries (Osaka, Japan). Bradford reagent was purchased from Bio-Rad Laboratories, Inc. (Hercules, CA, USA). MRBH, also called MGN-3 or BioBran, was provided by Daiwa Pharmaceutical Co., Ltd. (Tokyo, Japan).
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9

Ovarian Tissue Protein Analysis

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Ovarian tissues were immediately washed with ice 0.9% saline solution (w/v), weighed and homogenized in a volume of 100 mg tissue/300 μL of lysis buffer (0.1 M Tris, 0.01 M NaCl, 0.025 M EDTA, 1% NP40, 1% Triton X100, Sigma-Aldrich, Milan) supplemented with 2 mM sodium orthovanadate, 0.1 M sodium fluoride (Sigma-Aldrich, Milan), 1:100 mix of protease inhibitors (Sigma-Aldrich, Milan), 1:1000 phenylmethylsulfonyl fluoride (PMSF; Sigma-Aldrich, Milan), using an electric potter at 1600 rpm for 2 min. Samples were mixed for 30 min at 4 °C, centrifuged for 30 min at 13000 rpm at 4 °C and 40 μg of proteins for each samples resolved on SDS-PAGE gel at 15%. Proteins transferred to polyvinylidene fluoride membranes (PVDF, GE Healthcare Europe GmbH, Milan, Italy) were incubated overnight at 4 °C with specific primary antibody: anti-VDR receptor (1:400, Santa-Cruz), anti-ERβ (1:500, Santa-Cruz), anti-cyclin-D1 (1:1000, Euroclone, Milan, Italy). Protein expression was normalized and verified through β-actin detection (1:5000; Sigma-Aldrich) and expressed as a mean ± SD (%).
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10

Phosphatidylcholine Extraction and Analysis

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Purified phosphatidylcholine from soybean lecithin (Phospholipon 90G, CAS-number 97281-47-5) was purchased from Lipoid (Ludwigshafen, Germany). Trizma base, HEPES, Tween 20, Triton X-100, sodium dodecyl sulfate (SDS), glycine, ammonium persulfate, aprotinin, phenylmethylsulfonyl fluoride (PMSF), sodium orthovanadate, 2-mercaptoethanol, Hoechst 33258, and BSA-fraction V were obtained from Sigma Chemical Co. (St. Louis, MO, USA). PVDF membranes, high performance chemiluminescence film, and enhanced chemiluminescence- (ECL-) Plus are from Amersham Biosciences (GE Healthcare, Piscataway, NY, USA). Mini-Protean apparatus for SDS-polyacrylamide electrophoresis, miniature transfer apparatus, acrylamide, bis-acrylamide, and TEMED were obtained from Bio-Rad Laboratories (Hercules, CA, USA). Anti-EGFR (1005) antibody and secondary antibodies conjugated with HRP were purchased from Santa Cruz Biotechnology Laboratories (Santa Cruz, CA, USA). Antibodies anti-phospho-mTOR Ser2448, anti-mTOR, anti-p44/42 MAP kinase (ERK 1/2), and anti-phospho-p44/42 MAP kinase Thr202/Tyr204 were from Cell Signaling Technology Inc. (Beverly, MA, USA). Cy3-conjugated secondary antibody against rabbit polyclonal immunoglobulins was from Jackson ImmunoResearch Laboratories, Inc. Bicinchoninic acid (BCA) protein assay kit was obtained from Thermo Scientific, Pierce Protein Research Products (Rockford, IL, USA).
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