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39 protocols using gel imaging analysis system

1

Hippocampal 5-Lipoxygenase Expression

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After spatial memory evaluation, rats (n = 3) in each group were sacrificed, and brains were removed. Rat hippocampus were chopped into small pieces, homogenized in 0.5 ml of RIPA buffer. The dissolved proteins were collected from the supernatant after centrifugation at 12 000 × g at 4°C for 5 min. The supernatant was collected for Western blotting analysis. The protein concentration of the supernatant were determined with the BCA Protein Assay reagent kit following the manufacturer’s protocols. Equal amounts of protein samples were separated by SDS/PAGE and then transferred to PVDF membranes. The membranes were blocked with 5% skim milk for 2 h and incubated with rabbit anti-5-LO (1: 300; Beijing Boaosen Biotechnology Co., Ltd., Beijing, China) and rabbit anti-β-actin polyclonal antibody (1: 1 000; Beijing Boaosen Biotech-nology Co., Ltd., Beijing, China) at 4°C overnight. After washing with TBST, the membranes were incubated with a horseradish peroxidase-conjugated secondary antibody (1:2000) for 2 h at 37°C. Finally, the membranes were reacted with the ECL reagents and exposed on an X-ray film. The optical densities of 5-LO and β-actin bands on the X-ray film was measured using a Bio-Rad gel imaging analysis system (Bio-Rad Laboratories). The results were expressed as 5-LO/β-actin ratios.
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2

Primary Neuron Total RNA Extraction

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Total RNA was extracted from rat primary neurons according to RNAiso Plus reagent (Takara, China), cDNA templates was synthesized by PrimeScript® 1st Strand cDNA Synthesis Kit (Takara, China) following the manufacturer's instructions, and then amplified by using the Premix PCR kit (Cwbio, China). PCR products were separated by 2% agarose gel electrophoresis. All the samples were normalized by the expression level of β-actin. The optical density (OD) values were measured with a Bio-Rad gel imaging analysis system (Bio-Rad, USA). According to GenBank mPGES-1, EP1, EP2, EP3, EP4 mRNA sequence of rats and design primers. Target genes and reference gene (β-actin) primers by the Sangon biotech design and synthesis, primer sequences are listed in Table 1.
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3

Immunohistochemical Analysis of NF-κBp65

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The paraffin sections (the same as those for H&E staining) were used for immunohistochemical assays following the manufacturer’s protocol: The sections were deparaffinized in xylene and hydrated through a series of graded ethanol, and washed thrice with PBS (0.02 mmol/L, pH 7.4) for 3 min. The sections were incubated with 3% H2O2 for 10 min. After the section was rinsed for 3 min × 3 with PBS, the rehabilitation of antigen was performed by microwave oven. Then the sections were incubated with a polyclonal antibody to NF-κBp65, (diluted 1:100) overnight at 4°C. The sections were rinsed for 3 min × 3 with PBS before incubation with biotinylated goat anti-rabbit IgG antibody for NF-κBp65, for 40 min at 37°C, and incubated with streptavidin for 20 min,and then rinsed for another 3 min × 3 with PBS before reaction with DAB solution. The sections were counterstained with hematoxylin and then observed under a microscope. The absorbance value of 5-LO and β-actin mRNA was measured using a Bio-Rad gel imaging analysis system (Bio-Rad Laboratories). The absorbance ratio of 5-LO mRNA to β-actin mRNA was defined as the 5-LO mRNA relative quantity.
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4

Quantification of COX2 mRNA in Rat Cortex

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To determine the expression of COX2 mRNA in rat cortices, total RNA was extracted from the cortex using RNAiso Plus reagent (Takara, Japan). cDNA templates were generated by reverse transcription kit (Takara, Japan) following the manufacturer’s instructions and were amplified using the MIX PCR kit (Takara, Japan). PCR products were separated by 2% agarose gel electrophoresis and visualized by ethidium bromide staining. All the samples were normalized by the expression level of β-actin. The absorbance values of COX2 and β-actin mRNA were measured with a Bio-Rad gel imaging analysis system (Bio-Rad, USA). The primer sequences for COX2 were: forward 5′-TGAACACGGACTTGCTCACTTTG-3′ and reverse 5′-AGGCCTTTGCCACTGCTTGTA-3′ (107 bp), β-actin with forward 5′-ACGGTCAGGTCATCACTATCG-3′ and reverse 5′-GGCATAGAGGTCTTTACGGATG-3′ (155 bp).
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5

Quantifying L-PGDS, DP1, and DP2 mRNA

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To determine the expressions of L-PGDS, DP1, and DP2 mRNA in the control and the model groups, total RNA was extracted from the neurons using RNAiso Plus reagent (Takara, China) to generate cDNA templates by reverse transcription (RT) kit (Takara, China) following the manufacturer’s instructions, and then amplified by using the MIX PCR kit (Cwbio, China). PCR products were separated by 2% agarose gel electrophoresis and visualized by ethidium bromide staining. All the samples were normalized by the expression level of β-actin. The absorbance values of L-PGDS, DP1, DP2 and β-actin mRNA were measured with a Bio-Rad gel imaging analysis system (Bio-Rad, USA). The primer sequences for L-PGDS were: forward 5′-ATGTGCCAGACAGTGGTAGC-3′ and reverse 5′-TGGTCCTTGCTAAAGGTGATG-3′ (410 bp), DP1 (5′-TGAATGAGTCCTATCGCTGTC-3′ and 5′-GGTGATGTGCCTTTGGTAGAA-3′, 320 bp), DP2 (5′-CTTCCAAACCACAGCAACTC-3′ and 5′-CAGAGCATCAGGCAGACTC-3′, 326 bp), β-actin (5′-ACGGTCAGGTCATCACTATCG-3′ and 5′-GGCATAGAGGTCTTTACGGATG-3′, 155 bp).
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6

Protein Extraction and Analysis Protocol

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Total protein extraction was implemented using radio-immunoprecipitation assay (R0010, Solarbio) containing phenylmethylsulfonyl fluoride. The protein concentration was detected by bicinchoninic acid kit (C503021-0500, Shanghai Sangon Biological Engineering Technology & Services Co., Ltd., Shanghai, China). Next, 50 μg of protein was separated with sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE), and electrotransferred onto a polyvinylidene fluoride membrane (Merck Millipore, USA). Membrane blockade was conducted using 5% BSA on a shaking table for 1 h, and then the membrane was incubated overnight at 4 °C with the following primary antibodies: rabbit anti-PER2 (ab179813, 1:5000), Runx2 (ab23981, 1:1000), OCN (ab93876, 1:500), β-catenin (ab32572, 1:5000), C-Myc (ab32072, 1:1000), Cyclin D1 (ab16663, 1:4000), Wnt7b (ab94915, 1:1000), GAPDH (ab8245, 1:5000, internal reference), and histone H3 (ab1791, 1:1000). All antibodies were provided by Abcam. Subsequently, the membrane was incubated with the horseradish peroxidase-labeled goat anti-rabbit secondary antibody immunoglobulin G (IgG) (ab6721, 1:5000, Abcam) for 1 h. Following three TBST washes (15 min per wash), the membrane was added with the luminescent solution. The results were analyzed by Bio-Rad gel imaging analysis system (Bio-Rad, Hercules, CA, USA) and Image J.
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7

Western Blot Analysis of MAPK, Akt Signaling

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Cells (1 × 107) in each group were broken using RIPA buffer. Protein was extracted, and separated on 12% SDS/PAGE. Then it was transferred to PVDF membranes (Millipore, Bedford, U.S.A.), incubated with antibodies of mitogen-activated protein kinase (MAPK), Akt, pAkt (Ser473), GAPDH (Santa Cruz Biotechnology, 1:1000). Finally, the membranes were visualized using ECL substrate solution (Bio-Rad, U.S.A.) and examined by Bio-Rad™ gel imaging analysis system (Bio-Rad, U.S.A.). GAPDH was an internal control.
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8

Native PAGE Analysis of SDA Reaction

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The feasibility of the SDA reaction was explored by 8% native polyacrylamide gel electrophoresis (PAGE), which was conducted on DYY-6C electrophoresis analyzer (Liuyi Instrument Company, China) in 1× TBE buffer (90 mM Tris–HCL, 90 mM boric acid, 2 mM EDTA, pH 7.9) at a 120 V constant voltage for 30 min. The gel was stained with gold view (GV) for 30 min and photographed by gel imaging analysis system (Bio-Rad, USA).
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9

Protein Expression Analysis of Cartilage Tissue

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The cartilage tissue and chondrocytewere exposed to RIPA lysis buffer (Solarbio) to extract total protein, followed by quantification using bicinchoninic acid (BCA) detection kit (Shanghai UCHEM Inc., China). Afterwards, the separated proteins were transferred onto PVDF membranes (Zhejiang Lianshuo Biotechnology Co., Ltd., China). After blocking with 5% non-fat milk for 2 h, the membranes were incubated overnight at 4℃ with primary antibody, followed by incubated with anti-rabbit IgG (ab14708, 1:5000, Abcam) or anti-mouse IgG (ab3420, 1:5000, Abcam) at room temperature for 60 min. Finally, bands were visualized on gel imaging analysis system (Bio-Rad) using ECL chemiluminescence kit (Beyotime, P0018AS) and quantified using an Image J software (National Institutes of Health, Bethesda, Maryland, USA). The primary antibodies were as follows: anti-WTAP (ab195380, 1:1000, Abcam), anti-ADAMTS5 (ab41037, 1:250, Abcam), anti-MMP13 (ab39012, 1:3000, Abcam), anti-Collagen II (ab34712, 1:1000, Abcam), anti-Aggrecan (ab3778, 1:750, Abcam), anti-TIMP4 (ab58425, 1:750, Abcam), and anti-GADPH (ab8245, 1:1000, Abcam).
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10

Protein Expression Analysis in J774A.1 Cells

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J774A.1 cells were treated with LNO at 2.5 and 5 µg/ml for 12 h and then lysed in a RIPA lysis buffer (containing protein inhibitor). To obtain the total protein concentration, BCA Kit (Pierce) was employed. For each sample, 20 µg protein was loaded on SDS-PAGE and electrophoresed. The proteins were separated on a 12% or 5% SDS-polyacrylamide gel at 120 V and transferred to a nitrocellulose membrane at 250 mA. At room temperature, the membranes were blocked for 2 h by the solution containing 0.05% Tween-20 (TBST) and 5% non-fat milk that was diluted by TBS buffer. After rinsing with TBST three times, the membranes were incubated with various primary antibodies against β-actin, LC3 I, LC3 II, and p62 (Cell Signaling Technologies, USA) that were diluted by 1:1000, overnight at 4°C. After washing three times with TBST, the secondary antibodies in a blocking solution with a dilution of 1:3000 were added. After 2 h incubation, the membranes were rinsed three times with TBST, followed by chemiluminescence, and finally detected using a gel-imaging analysis system (Bio-Rad, UK).
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