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257 protocols using ab38449

1

Western Blot Analysis of PI3K/Akt/mTOR Pathway

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The assay was performed as described previously [26 (link)]. Cells were processed using radioimmunoprecipitation assay (RIPA) buffer, and the obtained cell lysate was centrifuged at 12,000 rpm for 20 min at −4°C. The cell lysate supernatant was collected for quantification using a bicinchoninic acid (BCA) kit (BCA Protein Assay Kit, P0010). Protein samples (25 µg) were fractionated using 10% sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) before polyvinylidene fluoride (PVDF) membrane transfer. Primary antibodies were diluted as instructed and then incubated with the membrane in a cool room for 24 h, followed by continuous incubation with horseradish peroxidase (HRP)-coupled secondary antibody at room temperature for another 1 h. Pierce electrogenerated chemiluminescence (ECL) Western blot substrate (Thermo Scientific, USA) was used to develop the membrane on X-ray films. The antibodies used were as follows: anti PI3K (ab278545), anti-Akt (ab38449), anti-phosphorylated (p)-Akt (ab38449), anti-p-mTOR (ab137133), and anti-mTOR (ab134903) antibodies obtained from Abcam (Cambridge, United States).
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2

Protein Expression Analysis by Western Blot

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Cells were lysed using RIPA buffer to obtain total protein. Protein concentration was measured by a BCA Protein Assay Kit (P0012, Beyotime, Shanghai, China). Equivalent amounts of proteins were then electrophoresed on SDS-PAGE and transferred onto PVDF membranes (FFP26, Beyotime, Shanghai, China). Membranes were blocked using 5% BCA for 2 h at room temperature and incubated with primary antibodies against protein ASAP3 (abs100894, Abisin, Shanghai, China), F-actin (ab205, Abcam, China), BMP2 (ab14933, Abcam, China), RUNX2 (ab76956, Abcam, China), AKT (ab38449, Abcam, China), p-AKT (ab38449, Abcam, China), and GAPDH (ab9485, Abcam, China) at 4°C overnight. After washing with PBST, membranes were incubated with secondary antibodies (Abcam, UK) at room temperature for 1 h. ECL solution (Thermo Fisher Scientific, China) was then prepared, and the bands on the membranes were scanned and imaged in a dark room. The results were quantified using ImageJ. GAPDH was used as the internal control [19 (link)].
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3

Western Blot Analysis of Autophagy and EMT Markers

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Proteins of lung tissues and RLE‐6TN cells were extracted with RIPA Lysis Buffer (Beyotime, Shanghai, China). After quantification, the protein samples were subjected to SDS-PAGE, then blotted onto polyvinylidene fluoride membranes (Millipore, Billerica, MA, USA). The membranes were probed with the following primary antibodies LC3B (ab48394, 1 µg/ml, Abcam), Beclin-1 (ab207612, 1:2000, Abcam), p62 (ab109012, 1:10000, Abcam), E-cadherin (ab231303, 1 µg/ml, Abcam), N-cadherin (ab76011, 1:5000, Abcam), Vimentin (ab92547, 1:1000, Abcam), α-SMA (ab124964, 1:10000, Abcam), collagen I (ab270993, 1:1000, Abcam), Fibronectin 1 (ab45688, 1:1000, Abcam), p-PI3K (ab182651, 1:1000, Abcam), PI3K (ab191606, 1:1000, Abcam), p-Akt (ab38449, 1:500, Abcam), Akt (ab38449, 1:500, Abcam), p-mTOR (AP0094, 1:500, ABclonal), mTOR (A2445, 1:500, ABclonal), CDC27 (A3333, 1:1000, ABclonal), and GAPDH (ab8245, 1:2000, Abcam) at 4°C overnight, followed by incubation with secondary antibody (bs-0295 G-HRP, 1:1000, Bioss). ECL chemiluminescence (Beyotime) was applied for analysis.
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4

Western Blot Analysis of EMT and PI3K/AKT Pathway

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Cells were collected and total protein were extracted using cell lysate (Thermo, USA), and the concentration of proteins was evaluated by a BCA kit (Beyotime, China). The proteins (20 μg) were separated by 10% SDS-PAGE and then transferred to the polyvinylidene difluoride (PVDF) membranes (Millipore, MA). After blocking with 5% skimmed milk for 1 h at room temperature, the membranes were incubated with the primary antibodies overnight at 4°C. Then it was rinsed three times and incubated with an HRP-conjugated secondary antibody at room temperature for 1 h. After washing the membrane three more times, we applied a chemiluminescence reagent for developing the proteins, which were placed under the gel imaging system for the image collection, and the gray value of the protein band was analyzed by ImageJ software for the calculation of the protein expression. The primary antibodies used in the study were as follows: E-cadherin (#14472, CST, USA), Vimentin (#5741, CST), N-cadherin (#13116, CST), Twist (ab50887, Abcam, UK), p-PI3K (ab278545, Abcam), PI3K (ab191606, Abcam), p-AKT (ab38449, Abcam), AKT (ab38449, Abcam), and GAPDH (ab8245, Abcam). The internal control was GAPDH.
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5

Protein Expression Analysis in CRC

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Total proteins were extracted from CRC tissue and cell samples by the RIPA reagent obtained from Sigma, USA, and separated using 10% SDS-PAGE. The isolated proteins were transferred into PVDF membranes followed by 5% nonfat milk incubation to minimize the noise. Next, the membranes were immersed in milk containing primary antibodies against SOCS3 (Rabbit, 1:2000, ab16030, Abcam, UK), CD133 (Rabbit, 1:1000, ab216323, Abcam), SOX2 (Mouse, 1:2000, ab171380, Abcam), OCT4 (Rabbit, 1:5000, ab109183, Abcam), AKT (Rabbit, 1:500, ab8805, Abcam), STAT3 (Mouse, 1:5000, ab119352, Abcam), p-AKT (Rabbit, 1:1000, ab38449, Abcam), p-STAT3 (Rabbit, 1:5000, ab76315, Abcam), and GAPDH (Rabbit, 1:3000, ab124905, Abcam), and incubated overnight. After excess primary antibodies were washed off by PBS, the membranes were probed by HRP-conjunct secondary antibodies, and the signals were visualized using the ECL reagent (Bio-Rad).
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6

Protein Expression Analysis of Rat Endometrium

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Rat endometrium tissues were initially homogenized and lysed in radio-immunoprecipitation assay (RIPA) buffer (Beijing Dingguo Changsheng Biotechnology Co. Ltd., China) supplemented with proteinase inhibitor (Lot#4693116001, Roche). Lysates were then centrifuged for 20 min at 12,000 g. The bicinchoninic acid (BCA) (Beijing Dingguo Changsheng Biotechnology Co. Ltd., China) was used for quantification of protein concentration. Equivalent amounts of protein (20 μg) were then used for western blot with primary antibodies of VEGF (ab53465, Abcam, UK), PI3K (ab191606, Abcam, UK), P-PI3K (ab182651, Abcam, UK), AKT (ab8805, Abcam, UK), P-AKT (ab38449, Abcam, UK), Ang-1 (ab102015, Abcam, UK), Ang-2 (ab155106, Abcam, UK) and HIF-1a (ab1, Abcam, UK) at 4 °C with gentle shaking overnight. After washing with TBS-T for three times, the membranes were then incubated with the secondary antibody at RT for 1 h and detected using an ECL plus kit (Beijing Dingguo Changsheng Biotechnology Co. Ltd., China). The ECL signals were detected with Quantity One software (Bio-Rad, Hercules, CA) and blot intensities were quantified by using imageJ (NIH, Bethesda, MD) software. Tubulin (ab8245, Abcam, UK) was used as an internal control to validate the amount of protein loaded onto the gels.
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7

Analyzing Lidocaine's Impact on U87 Cells

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Following treatment of U87 cells with Lid-FA-Lip (1 mM lidocaine, 37˚C for 24 h), total protein was extracted with RIPA buffer (Beyotime Institute of Biotechnology) and protein determination was performed using the BCA method. Protein samples (10 µg loaded per lane) were separated on 10% SDS-PAGE and transferred onto PVDF membranes (250 mA; 2 h), which were then blocked with 5% milk in TBS with 0.05% Tween-20 at 25˚C for 2 h. The PVDF membranes were subsequently treated with primary antibodies targeting the following proteins (all from Abcam): Bcl-2 (ab32124; dilution, 1:500), matrix metalloproteinase 2 (MMP2; ab92536; dilution, 1:500), Ki67 (ab92742; dilution, 1:1,000), phosphorylated (p-)PI3Kp85 (phospho Y607; ab182651; dilution, 1:1,000), PI3Kp85 (ab135253; dilution, 1:500), p-AKT (phospho T308; ab38449; dilution, 1:1,000), AKT (ab18785; dilution, 1:1,000) and GAPDH (ab8245; dilution, 1:3,000) at room temperature for 2 h. The membranes were then incubated with anti-rabbit (cat. no. ab6271; Abcam) or anti-mouse (cat. no. ab6728; Abcam) HRP-conjugated secondary antibodies (1:5,000 dilution) at room temperature for 1 h. Signals were then visualized using an ECL kit (Novex™ ECL Chemiluminescent Substrate Reagent kit; Thermo Fisher Scientific, Inc.) and visualized by ImageJ 8.0 software (National Institutes of Health).
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8

Quantification of Apoptosis-Related Proteins

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Cells were lysed in RIPA Lysis Buffer and a BCA Protein Assay kit (Thermo Fisher Scientific) was used to determine the protein concentration. Proteins of each sample were separated by SDS-PAGE gel. Then, the proteins were transferred onto a polyvinylidene fluoride membrane (Millipore, Billerica, MA, USA). After that, the membranes were blocked with 5% non-fat milk, followed by the incubation with primary antibodies at 4°C overnight: anti-Bax (Abcam; ab32503) (1:1000), anti-active caspase 3 (Abcam; ab2302) (1:1000), anti-Bcl-2 (Abcam; ab32124) (1:1000), anti-β-actin (Abcam; ab8227) (1:1000), anti-PTEN (Abcam; ab32199) (1:1000), anti-p-PI3K p85 (p-p85, Abcam; ab182651) (1:1000), anti-p-Akt (Abcam; ab38449) (1:1000). The membranes were washed in TBST three times then incubated with secondary antibodies for 1 hr at room temperature. Chemiluminescence (Millipore Corporation, Billerica, MA, USA) were applied to measure protein expression using densitometry analysis (ImageJ software).
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9

Insulin Signaling Pathway Regulation

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3-isobutyl-1-methylxanthine (IBMX, I5879), dexamethasone (D8893), human insulin solution (I9278), antibody to hypoxia-inducible factor (HIF-1α, H6536) and sodium sulfite (Na2SO3, S0505) were obtained from Sigma-Aldrich. Antibodies against glucose transporter 1 (Glut1; ab652), glucose transporter 4 (Glut4; ab654), Akt (ab8805), S6K (ab9366), phosphorylated Akt Thr308 (pAkt, ab38449), phosphorylated pyruvate dehydrogenase E1 Ser293 (pPDHE1, ab92696), and β-actin (ab6276) were obtained from Abcam (Cambridge, UK). Antibodies to pyruvate dehydrogenase E1 (PDHE1, sc-65242), insulin receptor β (IRβ, sc-711), insulin receptor substrate-1 (IRS-1, sc-7200), GSK-3β (sc-7291), SREBP1 (sc-13551) and phosphorylated GSK3β (pGSK3β; sc-11757-R) were obtained from Santa Cruz Biotechnology (Santa Cruz, CA). Antibody to phosphorylated AktSer473 was purchased from Calbiochem (Gibbstown, NJ). Antibodies to AMPK (#2603), phosphorylated AMPKα (Thr172, pAMPK, #2535), and phosphorylated acetyl CoA carboxylase (pACC, #3661) were purchased from Cell Signaling (Beverly, MA). Antibody to phosphorylated IRS-1 Ser-307 (28863) was purchased from Upstate Biotechnology (Canastota, NY). PPARγ (MAB3872) antibody was from EMD Millipore (Billerica, MA, USA).
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10

Autophagy Pathway Regulation Assay

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AS-IV (HPLC ≥ 98.81%) and fine particulate matter standards were respectively purchased from Chengdu Munster Company (China) and National Institute of Standards and Technology (USA). 3-Methyladenine (3-MA) was purchased from Selleck, and polyvinylidene fluoride membranes were purchased from Bio-Rad (USA). Antibodies against the following targets were obtained from Abcam (Cambridge, UK): LC3B (ab48394), p62 (ab56416), PI3K (ab182651), Akt (ab185633), p-Akt (ab38449), mTOR (ab2732), p-mTOR (ab137133), Lamin B (ab16048), and GAPDH (ab181602). An antibody against p-PI3K (AF3242) was obtained from Affinity Biosciences (USA). An antibody against p65 (8242S) was obtained from Cell Signaling Technology (Danvers, MA, USA). Horseradish peroxidase (HRP)-labeled goat anti-rabbit IgG secondary antibody (GB23303) and 4°C tissue radioimmunoprecipitation assay lysates were obtained from Servicebio (Wuhan, China).
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