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18 protocols using opm 2

1

Human Myeloma Cell Lines for Research

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Human myeloma cell lines (HMCLs) KMS-12-PE, MOLP-8, OPM-2 and U-266 were obtained from Deutsche Sammlung von Mikroorganismen und Zellkulturen (DSMZ, Braunschweig, Germany). NCI-H929 was purchased from American Type Culture Collection (ATCC, Manassas, VA, USA). KMS-11/BTZ and OPM-2/BTZ were acquired from Kyowa Hakko Kirin Co. Ltd. (Tokyo, Japan). LP-1 and RPMI-8226 were kindly provided by Prof. Robert Orlowski (Department of Lymphoma/Myeloma, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX, USA). JJN-3, OCI-MY5 and RPMI-8226R were kindly provided by Prof. Wee Joo Chng (Department of Medicine, Yong Loo Lin School of Medicine, National University of Singapore). WL-2 was kindly provided by Prof. Andrew Zannettino (Myeloma Research Programme, The University of Adelaide, Australia). MMLAL [32 (link)] and MMKKF (unpublished) were established from the myelomatous pleural effusion of myeloma patients. Cell lines were cultured in RPMI-1640 medium (IMDM for LP-1, DMEM + IMDM for MMLAL), supplemented with 10% or 20% fetal bovine serum, 50 U/mL of penicillin and 50 μg/mL streptomycin, in a humidified atmosphere of 5% CO2 at 37 °C. All culture reagents were purchased from Invitrogen (Carlsbad, CA, USA).
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Establishment of Human Myeloma Cell Lines

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Human myeloma cell lines (HMCLs) LP-1 and RPMI-8226 were kindly provided by Professor Robert Orlowski (Department of Lymphoma/Myeloma, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA). JJN-3, OCI-MY5 and RPMI-8226R were kindly provided by Professor Wee Joo Chng (Department of Medicine, Yong Loo Lin School of Medicine, National University of Singapore). WL-2 was kindly provided by Professor Andrew Zannettino (Myeloma Research Programme, The University of Adelaide, Australia). KMS-11/BTZ and OPM-2/BTZ were obtained from Kyowa Hakko Kirin (Tokyo, Japan). NCI-H929 was purchased from American Type Culture Collection (Manassas, Virginia, USA). KMS-12-PE, MOLP-8, OPM-2 and U-266 were purchased from Deutsche Sammlung von Mikroorganismen und Zellkulturen (Braunschweig, Germany). MMLAL29 (link) and MMKKF (unpublished) were established from the myelomatous pleural effusion of patients with myeloma. Cell cultures were maintained in RPMI-1640 medium (IMDM for LP-1, DMEM + IMDM for MMLAL), supplemented with 10% or 20% fetal bovine serum, 50 U/mL of penicillin and 50 μg/mL streptomycin, in a humidified atmosphere of 5% CO2 at 37°C. All cell culture reagents were purchased from Invitrogen (Carlsbad, California, USA).
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Culturing Human Myeloma Cell Lines

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Human myeloma cell lines LP-1 and RPMI-8226 were kindly provided by Prof. Robert Orlowski (Department of Lymphoma/Myeloma, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX, USA), JJN-3 and OCI-MY5 by Prof. Wee Joo Chng (Department of Medicine, Yong Loo Lin School of Medicine, National University of Singapore), and WL-2 by Prof. Andrew Zannettino (Myeloma Research Programme, The University of Adelaide, Australia). NCI-H929 was purchased from American Type Culture Collection (Manassas, VA, USA). Other myeloma cell lines (KMS-12-PE, MOLP-8, OPM-2 and U-266) were purchased from Deutsche Sammlung von Mikroorganismen und Zellkulturen (DSMZ) (Braunschweig, Germany). Cells were cultured in RPMI-1640 medium (IMDM for LP-1), supplemented with 10% fetal bovine serum, 50 U/ml of penicillin and 50 ug/ml streptomycin, and incubated in a humidified atmosphere of 5% CO2 at 37 °C. All cell culture reagents were purchased from Invitrogen (Carlsbad, CA, USA).
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Provenance Verification of Cell Lines

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Primary CLL cell lines (n=46) and age-matched normal B and T cells were obtained with informed consent in accordance with the ethical approval granted by South East Wales Research Ethics Committee (02/4806). In addition, five multiple myeloma cell lines, JJN3, U266, OPM2, MM.1S and H929, were obtained from the Deutsche Sammlung von Mikroorganismen und Zellkulturen. The provenance of the cell lines was verified by multiplex polymerase chain reaction of minisatellite markers; all were certified mycoplasma-free.
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Cell Line Authentication and Characterization

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RT112, OPM2, CAL51, HCC366 and HCC78 cells were obtained from Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (Braunschweig, Germany). EBC-1, MKN45, MKN1 and MKN28 cells were purchased from JCRB Cell Bank (Tokyo, Japan). UMUC14 cells were obtained from the European Collection of Cell Cultures (Salisbury, UK). SUM52PE cells were obtained from Asterand Company. MGC-823 and MDA-MB-453 cells were obtained from the Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences (Shanghai, China). SGC-7901 cells were obtained from the Shanghai Cancer Institute, Renji Hospital, Shanghai Jiaotong University School of Medicine (Shanghai, China). Human umbilical vein endothelial cells (HUVECs) were obtained from ScienCell Research Laboratories (Shanghai, China). Other cell lines used in the present study were purchased from American Type Culture Collection (Manassas, United States). Some background information of cell lines used in the study was listed in Additional file 1: Table S1. All cell lines were obtained between 2000 and 2017 and cultured according to the provided instructions. The cells were confirmed to be free of mycoplasma and were passaged no more than 25–30 times after thawing. The cell lines were characterized using short tandem repeat markers by Genesky Biopharma Technology (most recent test in 2017).
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Evaluating Selective Kinase Inhibitors in Multiple Myeloma

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This study used 6 HMCLs, NCI-H929, OPM-2, AMO-1 (Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Braunschweig, Neddersassen, Germany), RPMI8226 (American Type Culture Collection, Manassas, VA, USA), KMS-12-BM and KMS-28-PE (kind gifts from Dr. Ohtsuki T (Kawasaki Medical School, Kurashiki, Okayama, Japan)), harboring various types of chromosomal abnormalities and gene mutations (Supplementary Information). HMCLs were grown in RPMI-1640 with 10% fetal calf serum, 2 mM L-glutamate, and penicillin/streptomycin at 37 °C in a fully humidified atmosphere of 5% CO2 in the air. Patient-derived CD138-positive myeloma cells were isolated using MACSprepTM Multiple Myeloma CD138 MicroBeads (Miltenyi Biotec, Bergisch Gladbach, Nordrhein-Westfalen, Germany) [5 (link),29 (link)], and were grown in RPMI-1640 with 10% fetal calf serum, 2 mM L-glutamate, penicillin/streptomycin, and CellXVivo Human B Cell Expansion Kit (R&D systems, Minneapolis, MN, USA). The agents used were BI-D1870, which selectively inhibits the phosphorylation of RSK2Ser227 at NTKD in an ATP-competitive manner [64 (link)] (Cayman Chemical Company, Ann Arbor, MI, USA), and ipatasertib, which binds to AKT in an ATP-competitive manner and prevents substrate phosphorylation [65 (link)] (Selleck Biotech Ltd., Tokyo, Japan).
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Cell Culture Protocols for Multiple Myeloma

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The HMCL MM1S was acquired from American Type Culture Collection, and JJN3, RPMI-8226, U266, and OPM2 were obtained from Deutsche Sammlung von Mikroorganismen und Zellkulturen. LINF903, an Epstein–Barr virus-transformed B-cell line established from a healthy individual, was obtained from the National DNA Bank of the University of Salamanca, Spain. MM and LINF903 cell lines were cultured in RPMI 1640–l-glutamine medium (Sigma-Aldrich, St. Louis, MO, USA) supplemented with 10% of fetal bovine serum (Sigma-Aldrich) and antibiotics (Gibco Life Technologies, Grand Island, NY, USA). All cells were incubated at 37°C in a 5% CO2 atmosphere. The presence of mycoplasma was routinely checked with a MycoAlert kit (Lonza, Basel, Switzerland) and only mycoplasma-free cells were used in the experiments.
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8

Cell Line Verification and Maintenance Protocol

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MM.1S, RPMI 8226, H929, U266, and human embryonic kidney (HEK) 293T cells were purchased from the American Type Culture Collection. AMO-1, JJN-3, OPM2, and KMS-12BM cells were purchased from Deutsche Sammlung von Mikroorganismen und Zellkulturen (DSMZ). All cell lines were verified by short tandem repeat (STR) DNA fingerprinting analysis (Molecular Diagnostic Laboratory, DFCI) and tested for mycoplasma using the MycoAlert Mycoplasma Detection Kit (Lonza). All cells were grown at 37°C in 5% CO2 condition: MM.1S, RPMI 8226, H929, U266, AMO-1, JJN-3, OPM2, and KMS-12BM cells were maintained in RPMI 1640 medium; HEK293T cells were maintained in Dulbecco’s modified Eagle’s medium. All media were supplemented with 10% fetal bovine serum (FBS), 1× antibiotic-antimycotic, 1× GlutaMAX, and 1× Hepes.
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Culturing Human Multiple Myeloma Cells

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Human multiple myeloma cell lines (HMCLs) U266, KMS-12-BM, OPM-2, NCI-H929, SK-MM-1 and RPMI8226 were obtained from the German Collection of Microorganisms and Cell Cultures (Braunschweig, Germany). MM.1S and MM.1R cells were kindly provided by Dr. Steven Rosen (Northwestern University, Chicago, IL). A human bone marrow mesenchymal stromal cell line immortalized by enforced expression of telomerase (BMSC TERT+) was kindly provided by Dr. Dario Campana (St. Jude Children’s Research Hospital, Memphis, TN). All cell lines were cultivated in RPMI-1640 medium supplemented with 10 % heat-inactivated fetal bovine serum, 2 mM L-glutamine and 100 U/ml penicillin/streptomycin (Gibco). BMSC TERT+ cells were supplemented with 1 μM hydrocortisone (Sigma-Aldrich). For co-culture experiments, 1 × 105 BMSC TERT+ cells were seeded in 24-well plates and cultured overnight before 2 × 105 MM cells were added per well for 72 h.
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10

Cell Line Validation and Maintenance

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Human myeloma cell lines AMO-1, MOLP-8, RPMI-8226, KMS-12-BM, EJM, IM-9, U-266, OPM-2, and LP-1, chronic myeloid leukemia cell line K562, and human embryonic kidney cell line 293 were newly obtained from the German Collection of Microorganisms and Cell Cultures (DSMZ, Braunschweig, Germany). Two additional human myeloma cell lines, Brown and SK-007, were provided by the New York branch of the Ludwig Institute for Cancer Research (LICR). Upon arrival in our laboratory, the authenticity of the cell lines was verified using cytology and flow cytometry. All cell lines were maintained in RPMI 1640 medium (Invitrogen, Carlsbad, CA, USA) with penicillin–streptomycin (Invitrogen) and 10% fetal calf serum (Lonza, Basel, Switzerland).
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