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44 protocols using mda mb 468

1

Cell Line Characterization and Manipulation

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The human breast cancer lines MDA-MB-157, MDA-MB-231, MDA-MB-468 and MCF7, the human pancreas cancer cell line MIAPaCa2 and the human gastric cancer cell line MKN45 were purchased from ATCC (Manassas, VA, USA). MDA-MB-157 cells were cultured in Roswell Park Memorial Institute-1640 (Sigma-Aldrich, St Louis, MO, USA) and MDA-MB-231, MDA-MB-468, MCF7, MIAPaCa2 and MKN45 cells were cultured in Dulbecco's modified Eagle's medium (DMEM; Sigma-Aldrich) supplemented with 10% fetal calf serum (FCS) at 37 °C in 5% CO2. Short-hairpin RNA for human ERO1-α (TR313168) was purchased from OriGene (Rockville, MD, USA) and transfected to MDA-MB-231, MCF7 and MIAPaCa2 cells using Lipofectamine 2000 (Life Technologies, Carlsbad, CA, USA). To establish cells with ERO1-α-overexpression, MDA-MB-231 cells were transfected with human ERO1-α cDNA using Lipofectamine 2000 (Life Technologies) as per the manufacturer's instructions. Cells were stably propagated under puromycin selection (1 or 2 μg ml−l). The ERO1-α inhibitor EN460 was purchased from Millipore (Billerica, MA, USA).
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2

Breast Cancer Cell Line Culture Protocol

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The human basal‐like ER‐negative cell line MDA‐MB‐468 (CVCL_0419), was cultured in Dulbecco's modified Eagle's medium (Sigma‐Aldrich, St. Louis, MO, USA) containing 5.6 mm glucose, 1 mm sodium pyruvate, 4 mm l‐glutamine, 25 mmN‐2‐hydroxyethylpiperazine‐N′‐2‐ethanesulfonic acid, and 8% FBS (Sigma‐Aldrich). The human ER‐positive ductal breast carcinoma cell line T47D (CVCL_0553) (subtype luminal A) and the human ER‐negative cell line MDA‐MB‐231 (CVCL_0062) (claudin low) were cultured in Roswell Park Memorial Institute medium (RPMI; Sigma‐Aldrich) containing 11 mm glucose, 2 mm l‐glutamine and 8% FBS. All cell lines were cultivated in 25‐ and 75‐cm2 flasks (Corning Inc., Corning, NY, USA) at 37 °C, 5% CO2 in a humidified incubator and were routinely tested for mycoplasma (Venor®GeM; Minerva Biolabs, Skillman, NJ, USA). All cell lines were acquired from ATCC (Manassas, VA, USA) and routinely authenticated using the 13 core CODIS short tandem repeats loci plus Penta E, Penta D and the gender‐determining locus amelogenin.
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3

Cell Culture Protocols for Breast Cancer Cell Lines

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MCF-10A, MDA-MB-231 and MDA-MB-468 cells were obtained from American Type Cell Culture (ATCC, Manassas). Cells were grown under standard conditions of 5% CO2 and 37 °C in a controlled humidified incubator. MDA-MB-231 and MDA-MB-468 cells were cultured in Dulbecco’s Modified Eagle’s Medium (DMEM) (Sigma Aldrich) supplemented with 10% FBS and 1% penicillin-streptomycin (GIBCO, USA). MCF-10A cells were cultured in DMEM media supplemented with Horse serum, EGF (100 mg/mL), Hydrocortisone (1 mg/mL), Insulin (10 mg/mL), Cholera toxin (1 mg/mL) and 1% penicillin-streptomycin. All the cells were used prior to passage 20. Cells were routinely passaged using 0.25% trypsin/0.1% EDTA. All the other chemicals were purchased from Sigma (St. Louis, MO, USA), unless otherwise mentioned.
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4

Culturing Breast Cancer Cell Lines

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The breast cancer cell lines BT-20, BT-549, EFM-19, MCF-7, MDA-MB-157, MDA-MB-231, MDA-MB-361, MDA-MB-436, MDA-MB-468, T-47D were purchased from ATCC. NCI-H1703 (KRAS mutant vs wild-type), DLD-1 (KRAS G13D/wt) and DWT7 (del/wt) were previously described [16 (link)]. MCF-7, MDA-MB-157, MDA-MB-231, MDA-MB-361, MDA-MB-436, MDA-MB-468 were cultivated in DMEM, BT-549, EFM-19, T-47D, NCI-H1703 in RPMI, DLD-1 and DWT7 in McCoy media, and BT-20 in Eagle’s Minimum Essential Medium, supplemented with 10% BGS, 2mM glutamine, 100 U/ml penicillin and 10% HEPES (all Sigma-Aldrich). All cell lines were cultured in a humidified incubator at 37°C and 5% CO2 and passaged for < 3 months after thawing a given frozen vial. All cell lines were tested mycoplasma free prior to the experiments (MycoAlert, Lonza) and none was ever treated for mycoplasma throughout the experiments. For 3D culture of tumor spheres, ~10,000 cells/well were grown in black round bottom polystyrene ultra-low attachment microplates (Corning) using serum-free medium composed of DMEM (Sigma-Aldrich), basic fibroblast growth factor (bFGF), and EGF (20 ng/mL each, Sigma-Aldrich), and B27 supplement (Life Technologies).
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5

Stable Knockdown of MUC1 in TNBC Cells

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The TNBC cell lines MDA-MB-231 and MDA-MB-468 were purchased from American Type Culture Collection (ATCC, Manassas, VA). Cells were cultured in Dulbecco's Modified Eagle Medium (DMEM) supplemented with 10% fetal bovine serum (FBS), 100 U/ml penicillin, and 100 μg/ml streptomycin in a humidified atmosphere at 37°C with 5% CO2 under atmospheric oxygen conditions (20%). Stable knockdown cells MDA-MB-468 were cultured in media supplemented with 2.5 μg/ml puromycin (Sigma-Aldrich, St. Louis, MO). For stable knockdown, cells were infected with shRNA lentiviral particles produced in HEK293T cells targeted to human MUC1 mRNA, as previously described [18 (link)]. MUC1-specific lentiviral shRNA plasmids were purchased from Sigma-Aldrich (St. Louis, MO).
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6

Culturing Breast Cancer Cell Lines and Murine Macrophages

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MCF7 (HTB-22) and MDA-MB468 (HTB-132) breast cancer cell lines were purchased from the American Type Culture Collection (ATCC, Manassas, VA, USA). Murine bone marrow derived macrophages (BMDMs) were kindly provided by Dr Luisa Martinez-Pomares, Faculty of Medicine and Health Sciences, University of Nottingham. MCF7 cells were cultured in Eagle’s minimum essential medium (EMEM) (M2279; Sigma-Aldrich, St Louis, MO, USA) supplemented with 10% fetal bovine serum (FBS), 0.01 mg/ml human recombinant insulin, 2 mM l-glutamine, 1 mM sodium pyruvate, 1% minimum essential medium non-essential amino acids. MDA-MB468 cells were cultured in Dulbecco’s modified Eagle medium (DMEM) (D6046; Sigma-Aldrich) supplemented with 10% FBS. BMDMs were cultured in Roswell Park Memorial Institute medium (RPMI) 1640 (R0883; Sigma-Aldrich) supplemented with 10% FBS, 2 mM l-glutamine, 100 U/ml penicillin and 100 µg/ml streptomycin sulphate. All cell lines were incubated in a humidified atmosphere containing 5% CO2 at 37 °C.
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7

Culturing Human Breast Cancer Cell Lines

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T47D (ATCC® HTB-133™), MCF7 (ATCC® HTB-22™), MDA-MB-231 (ATCC® CRM-HTB-26™), MDA-MB-468 (ATCC® HTB-132™) and BT-549 (ATCC® HTB-122™) human BC cell lines were obtained from the American Type Culture Collection (Manassas, VA, USA). T47D, MCF7, MDA-MB-231 and MDA-MB-468 cancer cells were grown in DMEM/Nutrient F-12 Ham (DMEM/F12) culture medium (Sigma) with 10% FBS (Sigma), penicillin (100 IU/mL) (Sigma) and streptomycin (100 μg/mL) (Sigma). BT-549 cells were maintained in Roswell Park Memorial Institute Medium (RPMI) culture medium (ATTC) with 0.023 U/mL insulin (Sigma), 10% FBS (ATTC), penicillin (100 IU/mL) (Sigma) and streptomycin (100 μg/mL) (Sigma). Mycoplasma-free cultures were maintained in a humidified atmosphere with 5% CO2 at 37°C.
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8

Sunitinib Dissolution and Breast Cancer Cell Culture

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Sunitinib (Selleckchem, Houston, TX) was dissolved in dimethyl sulfoxide (DMSO; Sigma-Aldrich, St. Louis, MO) and diluted in cell culture media or PBS for in vitro use. Human breast cancer cell lines MDA-MB-231, MDA-MB-468, SKBR-3, MCF-7, and HCC-1419 were obtained from American Type Culture Collection (ATCC, Manassas, VA). The MDA-MB-231, HCC-1419, and MDA-MB-468 cell lines were cultured in RPMI media (Sigma-Aldrich). MCF-7 cell lines were cultured in EMEM media (ATCC). SKBR-3 cells were cultured in McCoy's 5A media (Gibo; Rockville, MD). In all media, 10% fetal bovine serum (Atlantic Biologicals, Miami, FL), 1% Pen/strep (Gibco), 1% sodium pyruvate, 1% NEAA, and 1% glutamine (Gibco) were added and cultured cells were maintained at 37°C and 5% CO2 humidified atmosphere.
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9

Bioink Preparation for 3D Bioprinting of Breast Cancer Cells

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The human breast cancer cell line, MDA-MB-468, was purchased from ATCC (LCG standards, Teddington, UK) and cultured in Dulbecco’s modified Eagle’s medium (DMEM, high glucose, SH30243.01, Cytiva, Marlborough, USA), supplemented with 10% fetal bovine serum (FBS, FBS12A, Capricorn Scientific, Ebsdorfergrund, Germany), and 1% penicillin/streptomycin (15140-122, Gibco, Thermo Fisher Scientific, Waltham, MA, USA), in a humidified atmosphere of 5% CO2 at 37 °C. The MDA-MB-468 routinely passaged every 2 or 3 days and tested for mycoplasma.
To prepare the bioinks for printing, exponentially growing MDA-MB-468 were trypsinized (T4049, Sigma-Aldrich, St. Louis, MO, USA), and the viable ones were counted on a hemocytometer via trypan blue (15250-061, Gibco) exclusion. The cells were then centrifuged at 1500 rpm for 5 min, and resuspended at 2.5, 7.5, and 20 × 104 cells/μL, in medium with or without 10% glycerol (autoclaved sterile, 40058-ATO, Lach-Ners.r.o.). The resuspended cells were kept on ice until direct printing, normally within one hour.
After printing, the cells (coverslips) were transferred into 24-well plates, and 0.5 mL of complete medium was added to each well.
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10

Breast Cancer Cell Line Cultivation

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The BC cell lines were purchased from ATCC (VA, USA) (Additional file 1: Table S1). MCF7, T47D, BT-549 and MDA-MB-231 were cultured in RPMI (Sigma Aldrich, USA), while BT-474, SkBr3, MDA-MB-468, BT-20 and Hs578T were cultured in DMEM supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin (Sigma Aldrich, USA). The immortalized human mammary epithelial cells hTERT-HME1 (ATCC, USA) were grown in DMEM/F-12 mixture medium supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin (Sigma Aldrich, USA). The human mammary epithelial cells HMEpC were purchased from cell applications (CA, USA) and maintained in defined mammary epithelial cell medium provided by the company (Cell applications, USA).
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