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5 protocols using rabbit anti par antibody

1

Detecting DNA Damage in A549 Cells

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A549 cells were harvested to a density of 1.125 × 105 cells/mL in complete media and 40 µL/well seeded into 384-well plates (Greiner, Kremsmunster, Austria; 781090) using a Multidrop Combi. Following incubation under tissue culture conditions overnight, test compounds were added using an Echo 555. Following 1 h compound incubation, DNA damage was induced by the addition of 5 µL/well 9 mM H2O2 for 10 min under tissue culture conditions. Media was removed and cells were fixed in 20 µL of ice-cold methanol for 15 min at 4 °C. Blocking solution (3% bovine serum albumin [BSA] in phosphate-buffered saline with Tween 20 [PBST]) was added (1 h, RT). Twenty microliters per well of rabbit anti-PAR antibody (Trevigen, Gaithersburg, MA; 4436-BPC-100) at 1:1000 was added overnight (4 °C). Following three washes in PBST, 20 µL/well AlexaFluor 488 goat anti-rabbit (Invitrogen, 1:500) and Hoescht stain (Invitrogen, 1:5000) were added (1 h, RT). Following three washes in PBST, cells were imaged in 30 µL/well PBS using a CellInsight (Thermo Fisher) fitted with a 10× objective.
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2

Plant Nuclei Isolation and PAR Quantification

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For the isolation of plant nuclei and nuclear protein extraction, the CelLytic PN kit (Sigma Aldrich) was used [109 (link)]. The protein (5 μg) was analysed for PAR accumulation levels by ELISA using (Trevigen) purified monoclonal antibody to PAR as the capture reagent, a rabbit anti-PAR antibody (Trevigen) as the detecting agent, and a goat anti-rabbit antibody conjugated with alkaline phosphatase (Sigma Aldrich) as the reporter [110 (link)]. PAR polymer (Trevigen) was used as a positive control.
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3

Cell Death Pathway Analysis

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The following reagents were obtained commercially: rabbit anti-caspase-3 from Cell Signaling Technology (Danvers, MA, USA); rabbit anti-HMGB1 from Abcam (Cambridge, UK); mouse anti-β-actin, H2O2, t-BHP, propidium iodide (PI), STS, Necrostatin-1 (Nec-1), 3-Aminobenzamide (3AB), 3,4-dihydro-5-[4-(1-piperidinyl)butoxyl]-1(2H)-isoquinolinone (DPQ), poly-l-lysine, nicotinamide adenine dinucleotide (NAD), SI and 50% glutaraldehyde from Sigma-Aldrich (Saint Louis, MO, USA); horseradish peroxidase (HRP)-conjugated anti-mouse antibody, HRP-conjugated anti-rabbit antibody, fluorescein (FITC)-conjugated anti-mouse antibody and 4′,6-diamidino-2-phenylindole (DAPI) from Thermo Fisher Scientific (Rockford, IL, USA); mouse anti-RIPK1 antibody, mouse anti-PARP-1 antibody, and Annexin V from BD Biosciences (San Jose, CA, USA); rabbit anti-RIPK3 antibody and mouse anti-AIF antibody from Santa Cruz Biotechnology (Dallas, TX, USA); rabbit anti-PAR antibody from Trevigen (Gaithersburg, MD, USA); mouse anti-PAR antibody from Enzo Life Sciences (Farmingdale, NY, USA); z-VAD-fmk from Millipore (Darmstadt, Germany); olaparib from Selleck Chemicals (Houston, TX, USA); UPF-1069 and XAV-939 from Tocris Bioscience (Minneapolis, MN, USA); and MNNG from Tokyo Chemical Industry (Tokyo, Japan).
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4

Plant Nuclei Isolation and PAR Quantification

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For the isolation of plant nuclei and nuclear protein extraction the CelLytic PN kit (Sigma-Aldrich, St. Louis, MO, USA) was used [61 (link)]. The protein (5 µg) was analysed for PAR accumulation levels by ELISA using a purified monoclonal antibody (Trevigen, Gaithersburg, MD, USA) to PAR as the capture reagent, a rabbit anti-PAR antibody (Trevigen, Gaithersburg, MD, USA) as the detecting agent, and a goat anti-rabbit antibody conjugated with alkaline phosphatase (Sigma-Aldrich, St. Louis, MO, USA) as the reporter [62 (link)]. PAR polymer (Trevigen, Gaithersburg, MD, USA) was used as a positive control.
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5

Plant Nuclear Protein Extraction and PAR Analysis

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For the isolation of plant nuclei and nuclear protein extraction, the CelLytic PN kit (Sigma Aldrich) was used [41 (link)]. The protein (5 µg) was analysed for PAR accumulation levels by ELISA using purified monoclonal antibody (Trevigen) to PAR as the capture reagent, a rabbit anti-PAR antibody (Trevigen; Gaithersburg, MD, USA) as the detecting agent, and a goat anti-rabbit antibody conjugated with alkaline phosphatase (Sigma Aldrich) as the reporter [42 (link)]. PAR polymer (Trevigen) was used as a positive control.
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