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6 protocols using paraformaldehyde (pfa)

1

Induction of HSP70 in Neutrophils

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Neutrophils in assay media were dispensed into polypropylene tubes (106 cells in 500 μl) and heated in a constant-temperature water bath at 40°C for 40 min or at 43°C for 10 min (heat shock). Some of the samples after heat treatment were then incubated at 37°C for different time intervals. Intracellular levels of HSP70 were then determined by indirect immunofluorescent staining followed by flow cytometry analysis. For intracellular labeling the neutrophils were fixed and permeabilized in DPBS containing 2% paraformaldehyde (Riedel-de Haen, Germany), 0.05% BSA and 0.05% Triton X-100 (Sigma-Aldrich, USA) at 37°C for 15 min. The permeabilized neutrophils were treated in 100 μl volume with primary HSP70-specific monoclonal antibody BRM22 (Sigma-Aldrich, USA) or in HSP70-specific B-hybridoma supernatants in 1:100 dilutions for 30 min at RT and then stained with secondary sheep anti-mouse IgG Fab-fragments conjugated with PE (Sigma-Aldrich, USA) for 30 min at RT. Each stage of labeling was followed by two washes with DPBS containing 0.2% BSA and 0.1% Triton X-100. The cells were finally resuspended in DPBS and analyzed by flow cytometry. HSP70 intracellular levels were determined as means of fluorescence intensity (MFI) corrected for background fluorescence of the negative controls.
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2

Biochemical Characterization of Proteins

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Unless otherwise specified, all chemicals and reagents, the ANTI-FLAG M2 affinity gel, the Immobilon-P PVDF Membrane (pore size: 0.45 μm) and Immobilon Western Chemiluminescent HRP Substrate were from Merck/Sigma-Aldrich and Millipore (Darmstadt, Germany). All cell culture media and supplements, the TurboFect transfection reagent, the Amplex® Red Cholesterol assay kit, the CellLight™ Golgi-RFP, BacMam 2.0 Golgi-labelling reagent, and the eight-well microscopy plates Nunc™ Lab-Tek™ II Chambered Coverglass were from Thermo Fisher Scientific (Waltham, MA, USA). Paraformaldehyde was from Riedel-de Haën (Seelze, Germany), the RC-DC Protein Assay kit from BioRad (Hercules, CA, USA), the ProSieve® QuadColor™ protein marker from Lonza (Basel, Switzerland) and the PNGase F was from New England Biolabs (Ipswich, MA, USA).
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3

Immunofluorescence Staining of Liver Tissue and HCC Cells

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Liver tissue was embedded in OCT (Sakura Finetek) and cryosectioned into 8 μm thick sample using Leica CM 1900 (Leica). The HCC cells were concentrated on the slide glass by Cytospin (Shandon). The samples were fixed with 4% paraformaldehyde (Sigma Aldrich) and permeabilized with 0.1% saponin (Sigma) for 15 minutes and 15 minutes, respectively. After the removal of culture medium, cells were fixed with 4% paraformaldehyde and permeabilized with 0.1% Triton X100 (Riedel-de-Haën) for 7 minutes and 15 minutes, respectively. Then the samples were blocked with 4% fetal bovine serum (FBS, diluted in PBS), stained by primary antibody solution at 4°C for overnight, secondary antibody at room temperature for an hour, and stained with Hoechst 33342 for 10 minutes before analyzed by fluorescence microscope or high content IN Cell Analyzer (GE Healthcare) and confocal fluorescence microscopy (Leica). The antibodies used in this study and its dilution condition was shown in Supplementary Table S1.
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4

Quantification of Microglia Surface Markers

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12–20 × 104 human primary microglia were stained in a v-bottom 96-wells plate (Greiner Bio-One, Austria) directly after isolation. pMG were washed with 100 µL PBS with 0.5% BSA (PBA) and incubated in 25 µL PBA with specific monoclonal or isotype control antibodies (Supplementary Table 3). After staining, the cells were washed with PBA, fixated with 4% paraformaldehyde (Riedel-de Haën, Germany) in PBS at room temperature and stored in the fridge for flow cytometry analysis the next day. All microglia samples were processed on a FACS Canto (BD Bioscience) with calibrated settings and similar voltage for the fluorescent channels. The geomean fluorescence intensity (MFI) was determined by subtracting the MFI of the isotype control from the MFI of the positive antigen staining.
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5

Immunohistochemical Localization of LTPs and ABA

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The roots were fixed for studying the immunohistochemical localization of LTPs and ABA at one and seven days after the introduction of sodium chloride into the root environment. Therefore, pieces of root tissue were taken from its central (middle part) and basal parts. Five millimeter root segments were fixed for 12 h in a solution of 4% N-(3-Dimethylaminopropyl)-N’-ethylcarbodiimide hydrochloride (Merck, Darmstadt, Germany) prepared in 0.1 M phosphate buffer (pH 7.2–7.4). Carbodiimide not only fixes proteins, but also conjugates ABA with tissue proteins [16 ,17 (link)]. Then, root tissues were placed in a mixture of 4% paraformaldehyde (Riedel de Haen, Seelze, Germany) and 0.1% glutaraldehyde (Sigma) for 12 h. After fixation, plant tissues were washed for 1 h in phosphate buffer and successively kept for 30 min in ethanol dilutions for their dehydration. Pieces of roots were embedded in JB4 resin (Electron Microscopy Sciences, Hatfield, PA, USA). Histological sections 1.5 μm thick were obtained using a rotary microtome (HM 325, MICROM Laborgerate, Germany).
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6

SARS-CoV-2 Neutralization and T-Cell Assays

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For neutralizing antibody assay, the cPass SARS-CoV-2 neutralization antibody detection kit for WT and VOCs were purchased from GenScript Biotech, NJ, USA. For spike (S)-specific T cell response assay, PepTivator® SARS-CoV-2 Prot_S Complete (peptide pools 15 mer sequences with a 11 amino acids overlap covering the full length of WT spike proteins) were purchased from Miltenyi Biotech (Bergisch Gladbach, Germany) For immunofluorescence staining, FITC-labeled anti-CD3 monoclonal antibody (mAb), PerCP-labeled anti-CD4 mAb, BV785-labeled anti-CD8 mAb, PECy7-conjugated anti-human IFN-γ mAb, PECy7-conjugated anti-TNF-α mAb, BV421-conjugated anti-Fas ligand (FasL) mAb, BV421-conjugated anti-IL-17A mAb, PE-conjugated anti-human cytokine (IL-4, IL-10, IL-17A) mAbs and fluorochrome-conjugated isotype matched control mAbs were purchased from BioLegend (San Diego, CA, USA). Brefeldin A and monensin were purchased from Sigma-Aldrich (Saint Louis, Missouri, USA). Saponin and paraformaldehyde were purchased from Riedel de Haen (Seelze, Germany).
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