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8 protocols using biotinylated anti rabbit igg h l

1

Colorectal Tumor Immunohistochemical Analysis

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Paraffin-embedded tissue sections of colorectal tumors were used for immunohistochemical analyses with the avidin-biotin complex immunoperoxidase technique after heating with 10 mM citrate buffer (pH 6.0). As the primary antibodies, polyclonal rabbit anti-MMP-9 immunoglobulin G (IgG) (Chemicon, Temecula, CA, USA) and anti-F4/80 IgG (Santa Cruz Biotechnology, Santa Cruz, CA, USA) were used at 100× and 200× dilution, respectively. As the secondary antibody, biotinylated anti-rabbit IgG (H+L) raised in a goat, affinity purified, (Vector Laboratories Inc., Burlingame, CA, USA) was employed at 200× dilution. Staining was performed using avidin-biotin reagents (Vectastain ABC reagents; Vector Laboratories Inc., Burlingame, CA, USA), 3,3’-diaminobenzidine, and hydrogen peroxide. The sections were counterstained with hematoxylin. As a negative control, duplicate sections were immunostained without exposure to the primary antibody.
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2

Quantifying Tumor Angiogenesis in Mice

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Mouse tumors were placed in 10% formalin for 24 h, washed with Dulbecco’s Phosphate Buffered Saline (Gibco), and placed in 70% ethanol before paraffin embedding. Five-micrometer sections were cut and mounted on glass slides. Slides were deparaffinized in 60 °C incubator and hydrated in Xylene. They were subsequently diluted in ethanol and water before being placed in Sodium Citrate at pH of 6 for antigen retrieval. Slides were probed with anti-CD31 rabbit polyclonal antibody (1:50, ab28364, Abcam) at 4 °C for 16 h. The slides were subsequently washed, conjugated with biotinylated anti-rabbit IgG (H + L) (Vector Laboratories, #BA-1000) secondary antibody, and incubated with HRP. Antibody complexes were detected with 3,3′-diaminobenzidine and counter stained with Mayer’s hematoxylin. Stained vessels were imaged with the Nikon Eclipse E800 and images were exported into ImageJ for counting and quantification [53 (link)]. The mean vessel density was calculated by averaging vessel counts from 4 random fields per slide, which is similar to what has been previously reported in the literature [54 (link)].
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3

Immunohistochemical Analysis of IκBα and TNFα

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Samples were deparaffinized and rehydrated. Antigen was retrieved using 0.01 M sodium-citrate buffer (pH 6.0) at a sub-boiling temperature for 10 min after boiling in a microwave oven. To block endogenous peroxidase activity, the sections were incubated with 3% hydrogen peroxide for 10 min. After 1 h of preincubation in 5% normal goat serum to prevent nonspecific staining, the samples were incubated with the antibody to IκBα (1:50, Cell Signaling Technology, 4814) or TNFα (1:50, Novus Biologicals, NBP1-19532) at 4°C overnight. The sections were incubated with a biotinylated secondary antibody (1:500, biotinylated anti-rabbit IgG(H+L), Vector Laboratories, BA-1000 for TNFα; 1:500, biotinylated anti-mouse IgG(H+L), Vector Laboratories, BA-9200 for IκBα) and then incubated with an avidin-biotin peroxidase complex solution (Vector Laboratories, PK-6100) for 30 min at room temperature. Color was developed using the DAB (diaminobenzidine) Substrate Kit (BD Biosciences, 550880). Counterstaining was carried out using Harris modified hematoxylin.
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4

Immunohistochemical Analysis of Apoptosis and NK Cells

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IHC was performed on a Leica Bond RX automated stainer using Bond reagents (Leica Biosystems, Buffalo Grove, IL), including a polymer detection system (DS9800, Novocastra Bond Polymer Refine Detection, Leica Biosystems). The chromogen was 3,3 diaminobenzidine tetrachloride (DAB), and sections were counterstained with hematoxylin. Staining for cleaved caspase 3 (CC3) used primary antibody (Cell signaling, Cat.9961) at 1:250 dilution and biotinylated anti-Rabbit IgG (H+L) as secondary antibody (Vector, Cat. BA1000) at 1:100 dilution. Staining for mouse NKp46 used primary antibody (R&D Systems, Cat. AF2225) at 1:1000 dilution and biotinylated anti-Goat IgG (H+L) (Vector, Cat. BA5000). Both markers used heat induced, pH 6.0 for epitope retrieval.
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5

Immunohistochemical Analysis of IκBα and TNFα

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Samples were deparaffinized and rehydrated. Antigen was retrieved using 0.01 M sodium-citrate buffer (pH 6.0) at a sub-boiling temperature for 10 min after boiling in a microwave oven. To block endogenous peroxidase activity, the sections were incubated with 3% hydrogen peroxide for 10 min. After 1 h of preincubation in 5% normal goat serum to prevent nonspecific staining, the samples were incubated with the antibody to IκBα (1:50, Cell Signaling Technology, 4814) or TNFα (1:50, Novus Biologicals, NBP1-19532) at 4°C overnight. The sections were incubated with a biotinylated secondary antibody (1:500, biotinylated anti-rabbit IgG(H+L), Vector Laboratories, BA-1000 for TNFα; 1:500, biotinylated anti-mouse IgG(H+L), Vector Laboratories, BA-9200 for IκBα) and then incubated with an avidin-biotin peroxidase complex solution (Vector Laboratories, PK-6100) for 30 min at room temperature. Color was developed using the DAB (diaminobenzidine) Substrate Kit (BD Biosciences, 550880). Counterstaining was carried out using Harris modified hematoxylin.
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6

Immunostaining and Metastasis Quantification Protocol

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Portions of tumors were fixed overnight in 10% neutral buffered formalin, and processed into 5 μm sections for immunostaining [25 (link)]. Sections were counterstained with hematoxylin and imaged using an E600 Eclipse microscope with NIS-Elements imaging software. The following antibodies were used: ERα (1/500; Santa Cruz Biotechnology, #SC-542), pAKTS473 (1/50; Cell Signaling Technologies, #3787), YAP (1/400; Cell Signaling Technologies, #14074), cleaved caspase-3 (Asp175) (1/100; Cell Signaling Technologies, #9661), pp70S6K (1/100; Cell Signaling Technologies, #9205), Ki-67 (1:500; Abcam, #15580), pS6RPS235/236 (1/400; Cell Signaling Technologies, #4858), and biotinylated anti-rabbit IgG (H&L) (Vector Laboratories, #BA-1000). Labeled cells were quantified by counting 200 cells in each of five random 40x fields of view (FOV) for each tumor.
All lungs from tumor-burdened mice were processed as above, and metastatic load was quantified in three step-sections, 50 μm apart. Metastases in ten random 10x FOVs were counted in each section, taking care to avoid recounting metastases which spanned multiple step-sections. Lesion area was quantified by tracing freehand perimeters using ImageJ software [26 ].
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7

Immunohistochemical Staining of Tyrosine Hydroxylase and GFAP

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Immunohistochemistry was performed using a rabbit monoclonal anti-tyrosine hydroxylase Th antibody (1:400, Abcam ab112), a rabbit antibody against the glial fibrillary acidic protein (Dako Z0334 polyclonal antirabbit GFAP, 1:500) and a biotinylated anti-rabbit IgG (H + L) (1:100; Vector Laboratories, Burlingame, CA, USA). The immunohistochemical staining was developed using the avidin–biotin–peroxidase complex (1:10; ABC Kit; Vector Laboratories) and DAB (Sigma). Immunohistochemical labeling was observed with an Olympus BX53 microscope and images were digitized.
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8

Immunohistochemistry of Histone Acetylation

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Acetyl histone H3K9 (C5B11) rabbit monoclonal antibody (mAb; 1:50 dilution), acetyl histone H3K18 (D8Z5H) rabbit mAb (1:50 dilution), and acetyl histone H3K27 (D5E4) rabbit mAb (1:50 dilution) primary antibodies were purchased from Cell Signaling Technology. Rabbit anti-glial fibrillary acidic protein (GFAP) antibody (1:2000 dilution) was obtained from Abcam. Mouse anti-GFAP antibody (1:1500, Proteintech), mouse anti-P75 nerve growth factor receptor (NGFR; 1:200, Abcam), and rabbit anti-IBA1 (1:200, WAKO) were also used as glial markers. Biotinylated anti-rabbit IgG (H+L) (1:200 dilution) and biotinylated anti-mouse IgG (H+L) (1:200 dilution) secondary antibodies were purchased from Vector Laboratories. Alexa Fluor 488 and Cy3 antibodies (1:1000 dilution) were purchased from Jackson ImmunoResearch, and DAPI (1:1000 dilution) was obtained from Invitrogen.
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