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14 protocols using caspase 8

1

Western Blot Analysis of Cellular Signaling

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Cells were lysed by RIPA buffer (50 mmol/L Tris-HCl, pH 7.4; 150 mmol/L NaCl; 1% (v/v) NP-40; 5 mmol/L EDTA; 1 mmol/L DTT; 0.5% sodium deoxycholate; 0.1% SDS; 1 mmol/L Na3VO4; and 1 mmol/L PMSF) and centrifuged at 12,000×g for 30 min at 4°C. Supernatant proteins were determined by Bradford method using BSA as standard and measured at 595 nm. After SDS page separation, proteins were transferred onto a PVDF membrane and revealed by ECL detection reagents. Primary antibodies used in the study included TNF-alpha, TRADD, β-actin, CaM, cytochrome C, calmodulin from Cell signaling technology (Denvers, MA, USA); caspase 8 were from Millipore (Billerica, MA, USA); RIP3 and calpain1 were from Biovision (Milpitas, CA, USA); caspase 3 and were from Abcam (Cambridge, UK).
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2

Molecular Mechanism of Drug-induced Apoptosis

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Vincristine, propidium iodide, anti-β-tubulin, FITC-conjugated anti-mouse IgG, poly-L-lysine hydrobromide, and SP600125 were purchased from Sigma Chemical Co. (St. Louis, MO, USA). Suberoylanilide hydroxamic acid (SAHA) and 21-900 (HDAC/tubulin inhibitor) were synthesized by Dr. Jing-Ping Liou (School of Pharmacy, College of Pharmacy, Taipei Medical University, Taiwan). The above drugs were dissolved in DMSO (dimethylsulfoxide) and then stored at −20 °C. The acetyl-Histone H3, cdk1, caspase 3, PLK1 (p-Thr210), cyclin B1, cdk1/cdc2 (p-Tyr15), and caspase 7 antibodies were all purchased from BD Biosciences (San Jose, CA, USA). Caspase 8, PARP, MPM2 (pSer/pThr), PLK1, and α-actin were purchased from Millipore (Bedford, MA, USA). Aurora A, p-JNK, BID, BCL-2, p-BCL-2, MCL-1, BAX, BAK, Ac-α-tubulin, caspase 9, and cleaved caspase 3 were purchased from Cell Signaling Technologies (Beverly, MA, USA). The labeled secondary antibodies goat anti-mouse IgG-HRP and goat anti-rabbit IgG-HRP were purchased from Santa Cruz (Santa Cruz, CA, USA).
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3

Purification and Phosphorylation of Beclin-1

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To generate glutathione-S-transferase (GST) fusion proteins, WT and mutant Beclin-1 cDNA fragments were sub-cloned into pGEX-4T1 vector (GE Healthcare). GST-fused Beclin-1 WT/AA was expressed in BL21 (DE3) E. coli cells by induction with 0.5 mM IPTG (isopropyl-β-D-1-thiogalactopyranoside) for 3 h at 37°C. GST fusion proteins were affinity purified with Glutathione-Sepharose resin (GE Healthcare, Waukesha, WI, USA) according to the manufacturer’s protocol. Protein samples were analyzed using gel electrophoresis and visualized by staining the gels with Gel Code Blue Stain Reagent (Pierce, Rockford, IL, USA).
1 μg Beclin-1 WT-GST and Beclin-1 AA-GST proteins were incubated with 100 ng active Akt1 (sigma) in 1X kinase buffer supplemented with ATP (Cell Signaling) for 30 min at 30°C followed by incubation with two units of caspase 8 (Millipore, Billerica, MA, USA) in the buffer (50 mM HEPES, pH 7.4, 100 mM NaCl, 10% sucrose, 1 mM EDTA, 0.1% CHAPS, and 10 mM DTT) at 37°C for 2 h. The reaction was stopped by adding 2× Laemmli sample buffer. Samples were heated at 95°C for 10 min and subsequently analyzed using gel electrophoresis, followed by western blotting.
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4

Chrysin and Sodium Selenite Cytotoxicity Study

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Chrysin (97% pure) was purchased from Sigma-Aldrich Chemical Co. (St. Louis, MO), sodium selenite (Na2SeO3) was obtained from LOBA Chemie (Mumbai, India), and Dulbecco’s modified Eagle’s medium (DMEM) and the antibiotics streptomycin and penicillin were obtained from HiMedia (Mumbai, India). Antibodies for m-calpain, Lp82, EGR-1, COX-1, caspase-3, caspase-8, caspase-9, and β-actin were purchased from Sigma-Aldrich Chemical Co. and Cell Signaling Technologies (CST; Danvers, MA). Anti-rabbit immunoglobulin (IgG) secondary antibody was obtained from Genei (Bengaluru, India). All other chemicals and reagents were of analytical grade. Milli-Q water (Millipore, Bengaluru, India) was used throughout the experiments.
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5

Western Blot Analysis of Caco-2 Cells

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For western blot analysis, Caco-2 monolayers were grown on 6-well cell-culture plates (corning) until 100% confluency. Monolayers were then incubated with 1 × 108 parasites/mL for 6 and 12 h, respectively, washed with PBS twice, and then scraped and collected. Monolayers were then incubated with RIPA lysis buffer supplemented with protease and phosphatase inhibitors (Pierce). Lysed samples were centrifuged at 21,000 rpm at 4°C for 30 minutes. Protein concentration of the supernatant was determined with the DC Protein Assay (Bio-Rad Laboratories). SDS-PAGE gels (12% and 15% Tris-HCL Ready-Gels; Bio-Rad Laboratories) were used to separate total proteins. Proteins were then transferred using a polyvinylidene difluoride (PVDF) membrane (Immobilon-P; Millipore). 5% of nonfat dry milk in % TBS-T was then used to block the membranes. After blocking, membranes were incubated with primary antibodies against, caspase 3, caspase 8, caspase 9, or ZO-1 (1 : 1000; Sigma) overnight at 4°C. After incubation with primary antibodies, membranes were washed and incubated with HRP-tagged secondary antibodies. Bands were detected using Amersham ECL Plus western blotting detection system (GE Healthcare). Autoradiographic films (Kodak) were then exposed to the membranes and developed on X-ray film processor SRX-101A (Konica Minolta).
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6

Molecular Pathway Regulation by Pharmacological Inhibitors

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Lanatoside C (lana.C), rottlerin, Ro318220, Gö6983 were purchased from Sigma Chemical Co. (St Louis, MO, USA). The above drugs were all dissolved in dimethylsulfoxide (DMSO). The non-conjugated primary antibodies were against C23 (nucleolin, Sigma Chemical Co., St Louis, USA), BID, caspase-8, caspase-9, PKCδ (Thr505), PKCδ, caveolin, phoshpo-p44/42 MAP kinas (Thr202/Tyr204), p44/42 MAP kinas (Thr202/Tyr204), phosho-SAPK/JNK (Thr183/Tyr185), p38 MAP kinase, phosho-mTOR, phosphor-p70 S6 kinase (Thr421/Ser424), phosphor-4E-BP1 (Thr37/46), phosho-eIF4E (Ser209), AKT (Cell signaling Technology, Beverly, MA, USA), AIF, Bcl-xl, Mcl-1, α-tubulin, PARP-1/2 (Santa Cruz Biotechnology Corp., Santa Cruz, CA, USA), caspase-2, caspase-6, caspase-7 (BD Biosciences, San Jose, CA, USA), phosho-AKT (Ser473, Epitomics Inc., Burlingame, CA, USA), caspase-3 (Imgenex, San Diego, CA, USA), β-actin (Millipore, Temecula, CA, USA). The secondary horseradish peroxidase (HRP)-conjugated anti-mouse and anti-rabbit IgGs were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). z-VAD-fmk was purchased from R&D system (Minneapolis, MN, USA).
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7

Molecular Profiling of Cancer Pathways

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PYKTIN® LCP was from Centrax International, Inc. (139 Mitchell Ave., Suite 101, South San Francisco, CA94080, USA). Primary antibodies used in this study included those against Cyclin A, Cyclin B1, GAL-3, E-cadherin, Snail, Twist, Vimentin and Zeb1 were purchased from cell signaling; and those against Survivin, Bcl-xL, Caspase-3, and Caspase-8 were from Sigma (St. Louis, MO). Alpha-tubulin antibody was from Santa Cruz Technologies. HRP-conjugated anti-rabbit or anti-mouse secondary antibodies were from GE Healthcare. 5-FU was purchased from APP Pharmaceuticals.
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8

Western Blot Analysis of Protein Signaling

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The protein sample was added to the corresponding sodium dodecyl sulfate (SDS) gel sample buffer, boiled, denaturalized for 5 minutes, before SDS-polyacrylamide gel electrophoresis, and then transferred onto membranes. The membranes were blocked in phosphate buffered saline with Tween (PBST) containing 5% defatted milk powder at room temperature for 1 hour, washed three times with PBST, and incubated with primary antibodies for NF-κB, TNF-α, IL-1β, IL-4, IL-6, IL-10, SOD-1, MDA5, IREa, Bcl-2, Bax, Caspase3, Caspase8, DDAH1, ADMA and p38(Sigma, USA) overnight at 4°C. Subsequently, the blot was washed and incubated with goat antimouse IgG conjugated to peroxidase(Sigma, USA). Antibody binding was detected by chemiluminescence staining using an ECL detected kit (Bio-Rad, USA). The density of each band was quantified by densitometry using Bandscan 5.0 software.
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9

Caspase-8 Cleavage of Vps34 Proteins

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Vps34 proteins (Wt and D285E) were incubated with six units of caspase 8 (Sigma) in caspase buffer (50 mM HEPES, pH 7.4, 100 mM NaCl, 10% sucrose, 1 mM EDTA, 0.1% CHAPS and 10 mM dithiothreitol) at 37 °C for 45 min. The reaction was stopped by addition of 2 × SDS sample loading buffer. Samples were detected by western blot analysis using antibody against Vps34.
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10

Western Blot Analysis of Apoptosis and Autophagy

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Cells were lysed in whole cell lysis buffer (100 mM Tris‐HCl pH 6.8, 20% (v/v) glycerol, 4% (w/v) SDS, 0.1% (w/v) bromophenol blue, 2.5% (v/v) β‐mercaptoethanol). Proteins were separated by SDS‐PAGE and transferred to nitrocellulose membranes (GE Healthcare, Munich, Germany), which were then blocked in 5% (w/v) non‐fat milk dissolved in PBS containing 0.1% (v/v) Tween 20 (Sigma‐Aldrich, P5927). Membranes were probed with specific antibodies against: caspase‐9 (Cell Signaling Technology (CST), Danvers, MA, USA, #9508), FADD (Santa Cruz, Dallas, USA, sc‐6036), cleaved caspase‐8 (CST, #8592), caspase‐8 (CST, #4790), caspase‐3 (CST, #9662), Atg5 (CST, #12994), light‐chain 3 (LC3) (Sigma‐Aldrich, L7543), p‐eIF2α (CST, #3398), eIF2α (CST, #5324), ATF4 (CST, #9508), CHOP (CST, #2895), FLAG (Sigma, F1084) and actin (Sigma‐Aldrich, A2066). Horseradish peroxidase (HRP)–conjugated antibodies were from Jackson ImmunoResearch, Ely, UK: anti‐rabbit (111–035–003), anti‐mouse (115–035–003) and anti‐goat (705–035–003). The signal was visualized using enhanced chemiluminescence reagent (PerkinElmer, Waltham, Massachusetts, USA, NEL102001EA) or ImmunoCruz Luminol Reagent (Santa Cruz, sc‐2048).
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