The largest database of trusted experimental protocols

Spinning disk microscope

Manufactured by Nikon
Sourced in Japan

The Spinning Disk microscope is a type of confocal microscope that uses a rapidly rotating disk with multiple pinholes to illuminate and capture high-resolution images of samples. It provides optical sectioning capabilities, allowing for the visualization of specific focal planes within a specimen. The core function of the Spinning Disk microscope is to enable efficient and high-speed imaging of live cells and other dynamic samples.

Automatically generated - may contain errors

24 protocols using spinning disk microscope

1

Fluorescence Recovery After Photobleaching

Check if the same lab product or an alternative is used in the 5 most similar protocols
The experiment was performed using Nikon Spinning Disk microscope equipped with two laser systems. A region of the indicated protein droplets was bleached by a 488 nm or 561 nm wavelength laser with the light intensity of 80%. Only the center of the droplets was bleached. Fluorescence intensity recovery data were recorded. Fluorescence intensity was obtained using FIJI (National Institutes of Health, Bethesda, USA). Fluorescence intensities of the region of interest (ROI) was subtracted by background intensity and then normalized by pre-bleached intensities of the ROIs. The FRAP recovery curve was fit to the formula described previously68 .
+ Open protocol
+ Expand
2

Immunofluorescence Imaging of Fixed Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
All cells were fixed by incubation in 100% methanol for 10 minutes at -20°C. Fixed samples were blocked with blocking buffer [PBS (Corning), 1% Normal Donkey Serum (ThermoScientific), 1% BSA (Sigma Aldrich), 0.1% Triton X-100] for 1 hour at room temperature. Primary antibodies were diluted in blocking buffer and then incubated overnight at 4°C. Secondary antibodies were diluted in blocking buffer and then incubated 1 hour at room temperature in the dark. Antibodies are listed in Table 1. Images were acquired using a Prime 95B camera mounted on a Nikon spinning disk microscope using a Plan Apo Lambda 20x objective lens. 9 randomized images per genotype and condition were captured. The software used for image acquisition and reconstruction were NIS-Elements Viewer (Nikon, Tokyo, Japan) and ImageJ (FIJI).
+ Open protocol
+ Expand
3

Immunofluorescence of RNA-FISH Probes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunofluorescence was performed in a RNase-free environment according to described above. All pipettes and bench were treated with RNaseZap (Life Technologies, AM9780). Then, cells were fixed with 4% (v/v) PFA for 24 h at 4 °C and washed three times with RNase-free PBS. Permeabilization and dehydration of cells were performed using 100% (v/v) methanol for washing for 10 min and this step was repeated four times. Rehydration step was performed using a series of graded methanol/PBST (75% (v/v) methanol, 50% (v/v) methanol, 25% (v/v) methanol, 0% (v/v) methanol) for washing for 5 min, respectively. RNA probes were designed to hybridize the exon region of the transcripts of PPRE-associated gene. RNA probe hybridization step was similar to DNA-FISH assay described above but in RNase-free solutions. Sequences of RNA-FISH probes are listed in Supplementary Table S4. HCR amplifier sequences were from previous study69 (link). Images were acquired at the Nikon Spinning Disk microscope with 100× oil immersion objective.
+ Open protocol
+ Expand
4

Cryogenic Muscle Imaging Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cryosections of 5 snap frozen soleus and TA muscles from control and Crym tg mice were stained with BODIPY (493/503) according to Spangenburg et al. (2011) and imaged with a Nikon spinning disk microscope (see above). Laser power and exposure settings were maintained for each section regardless of mouse strain, but these were altered between TA and soleus tissues. Accordingly, look up table values were also different from TA to soleus samples but the same within a tissue regardless of mouse strain.
+ Open protocol
+ Expand
5

High-resolution Imaging of Cellular Structures

Check if the same lab product or an alternative is used in the 5 most similar protocols
Live-cell imaging was performed on a spinning-disk microscope (Nikon) equipped with a 60×, 1.4 NA objective lens and a camera (HQ2 CoolSnap; Photometrics; images were taken every 20 min). Images of fixed cells were captured on a microscope (BX61; Olympus) equipped with a 100×, 1.4 NA objective lens, and a camera (HQ2 CoolSnap). Some fluorescent images shown are maximal projections of z stacks acquired with oil immersion objectives at 100× (NA = 1.4) mounted on a piezo ceramic (Physics Instruments). Both microscopes were controlled with Metamorph software (MDS Analytical Technologies). Fluorescence images were also taken using confocal z stacks acquired with a confocal microscope (TCS-SP2; Leica) through a 63× objective (NA = 1.4).
Automated image acquisition and analysis were performed as previously described (Pitaval et al., 2013 (link)). For the siRNA screen, the centrosome z position, percentage of ciliated cells, and cilia length were quantified for each treated cell.
+ Open protocol
+ Expand
6

Quantifying Basolateral Lipid Uptake

Check if the same lab product or an alternative is used in the 5 most similar protocols
Rptorfl/fl MPMECs were transduced with Ad-CMV-Null or Ad-CMV-iCre for 24 hrs on MatTek dishes with a No. 1.5 coverslip coated with 0.1% gelatin. Cells were stimulated with VEGF-B (300 ng/mL) for 30 hrs in EBM-2 supplemented with 1% FFA-BSA. Prior to imaging, live cells were stained with Phalloidin-iFluor594 (Abcam #ab176757) and Hoescht 33342 (Invitrogen #R37605), according to manufacturer’s instructions. Cells were incubated with BODIPY FL C16 (20 μM) for 20 min at 4°C, then washed 3x in EBM-2 with FFA-BSA. Cells were then incubated at 37°C for 5 min and immediately imaged using a Nikon Spinning Disk Microscope. Images from three regions were collected from three independent experiments. The z-plane representing the apical (top) and basolateral (bottom) edges of the cell were determined by phalloidin staining. The basolateral surface represents the bottom 10% of z-plane images for each cell. BODIPY-C16 intensity was quantitated in ImageJ, and the intensity present at the basolateral surface was calculated as a percent of whole cell intensity.
+ Open protocol
+ Expand
7

Proximity Ligation Assay for PDPK1-FLAG and WDR5

Check if the same lab product or an alternative is used in the 5 most similar protocols
Retroviral pBabe-puro U2OS cells stably expressing PDPK1-FLAG were plated onto coverslips pretreated with poly D-lysine. After plating, cells were treated overnight with 30μM C6 or C6nc. Cells were fixed in 4% methanol-free formaldehyde and permeabilized with 0.5% Triton. Proximity ligation assays were performed with the Duolink PLA mouse/rabbit kit (Sigma) according to the manufacturer’s instructions. Primary antibodies used were mouse anti-FLAG and rabbit anti-WDR5 (Bethyl 429A). Confocal images were acquired using an Andor DU-897 EMCCD camera mounted on a Nikon Spinning Disk Microscope.
+ Open protocol
+ Expand
8

Hemocyte Isolation and Immunostaining in Drosophila

Check if the same lab product or an alternative is used in the 5 most similar protocols
~13 larvae per condition or genotype were vortexed and bled into 300 μl of Schneider’s insect media and then the cells were transferred to one well (per condition) of the Lab-Tek II chambered coverglass (VWR, cat# 62407-056). Hemocytes were allowed to settle down for 30 min, then were fixed in 4% paraformaldehyde (PFA) for 20 min. Next, the cells were washed three times with 1X PBS and permeabilized with 0.1% PBST (PBS with 0.1% Triton-X) for 10 min. Subsequently, the cells were blocked with 5% BSA in PBST (blocking buffer) for 20 min and subsequently incubated with primary antibodies L1abc (1:100 dilution) overnight at 4°C. The next day, cells were washed three times in PBST and incubated with corresponding secondary antibodies (1:500 dilution) for 1 hr at room temperature. Finally, the cells were washed (3X) and mounting media with DAPI was directly added onto the cells in the wells and imaged using Nikon Spinning disk microscope.
+ Open protocol
+ Expand
9

PDPK1-EGFP Localization Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
U2OS cells stably expressing PDPK1-EGFP fusions were plated onto coverslips coated with poly-D lysine and cultured overnight in DMEM. Cells were then treated with 20 nM leptomycin B (LMB) or an equivalent volume of 70% methanol vehicle control in DMEM for four hours. Cells were fixed in 4% paraformaldehyde for 10 min at room temperature then washed three times for five minutes with PBS. Cells were permeabilized in PBS containing 0.1% (v/v) Triton X-100 for five min then washed three times for five minutes with PBS. Coverslips were then mounted in ProLong Diamond Antifade Mountant with DAPI. Confocal images were acquired using an Andor DU-897 EMCCD camera mounted on a Nikon Spinning Disk Microscope.
+ Open protocol
+ Expand
10

Immunofluorescence Imaging of Nuclear Receptors

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were seeded to reach 40%–60% confluence in 96-well or 24-well glass bottom plates (Cellvis, Mountain View, USA) coated with poly-L-lysine (Sigma, P4707). After washed with PBS, cells were fixed in 4% paraformaldehyde for 15 min at room temperature and washed with PBS for three times. Next, fixed cells were incubated in blocking solution (containing 5% (v/v) Normal Goat Serum (Bioss Antibodies, C01-03001), 0.3% (v/v) Triton X-100 in PBS) for 2 h at room temperature. After that, the cells were incubated with primary antibody of RXRα (Santa cruz, sc-515929), PPARγ (Cell Signaling, 2435 S) or mCherry (Thermo Fisher scientific, M11217) overnight at 4 °C. Next, cells were washed three times in PBS and then incubated with secondary antibodies conjugated to Alexa Fluor 555 (Cell Signaling, 4409 S), Alexa Fluor 488 (Cell Signaling, 4412 S) or Alexa Fluor Plus 488 (Thermo Fisher scientific, A48262) at 1:1000 dilution for 2 h at room temperature. During this period, 96-well plate was wrapped in foil to keep it in dark environment. Cells were then washed three times in PBS for 10 min. Nuclei staining was performed with DAPI (YEASEN, 40728ES10). Images were acquired at the Nikon Spinning Disk microscope with 100× oil immersion objectives. Fluorescence intensity was obtained using FIJI (National Institutes of Health, Bethesda, USA).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!