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33 protocols using ab227387

1

Western Blot Analysis of Chondrocyte Markers

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After lysing in RIPA buffer (Solarbio), cell lysates were centrifuged for protein collection. The concentration of protein sample was tested using a BCA kit (Abcam). Twenty microgram samples were loaded on sodium dodecyl sulfate/polyacrylamide gel electrophoresis and then transferred to nitrocellulose membranes (Solarbio). Next, the membranes were blocked in 5% non-fat milk, and then interacted with primary antibodies anti-Sry-type high-mobility-group box 9 (SOX9) (ab3697, 1:1000 dilution, Abcam), anti-collagen type II α 1 (COL2A1) (AB761, 1:100 dilution, Sigma–Aldrich), anti-Aggrecan (AB1031, 1:1000 dilution, Sigma–Aldrich), anti-TGFBR2 (ab186838, 1:500 dilution, Abcam) or anti-β-actin (ab227387, 1:5000 dilution, Abcam) and the secondary antibody conjugated by horseradish peroxidase (ab205718, 1:20000 dilution, Abcam). β-actin functioned as a loading control. Subsequently, the protein blots were developed via exposing to ECL reagent (Solarbio) and tested by ImageJ software (NIH, Bethesda, MD, U.S.A.). Relative protein level was normalized to the control group.
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2

Western Blot Analysis of Chromatin Modifiers

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Total fraction proteins were separated using 10% SDS-PAGE with Tris-Gly buffer and transferred to 0.45 μm nitrocellulose membrane (Bio-Rad, Hercules, CA, USA) for 1 h at 250 mA on ice. The assessment of the quality of protein transfer, hybridization with primary and secondary antibodies, and protein development were performed as described previously. For primary hybridization, rabbit antibodies (Abcam, Cambridge, UK) to SUV39H1 (ab245380, 1:3000), SUV39H2 (ab229493, 1:3000), G9a (ab183889, 1:3000), DOT1L (ab64077, 1:500), EZH2 (ab228697, 1:7000), BRD2 (ab139690, 1:10,000), BRD3 (ab264294, 1:5000), BRD4 (ab128874, 1:1000), and DNMT3a (ab2850, 1:500); rabbit antibodies (Invitrogen, Carlsbad, CA, USA) SUV420H1 (PA5-40926, 1:3000) and SUV420H2 (PA5-109891, 1:3000); and rabbit antibodies DNMT1 (ABclonal, San Diego, CA, USA, A5495, 1:3000) were used. Goat antibodies (Abcam, ab97051, 1:10,000) were used for secondary hybridization. To control protein loading, rabbit antibodies to β-actin (Abcam, Cambridge, UK, ab227387, 1:5000) were used. All experiments were performed at least three times.
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3

Western Blot Analysis of Protein Levels

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The proteins were extracted from cells or tissues using RIPA buffer (Beyotime) with protease inhibitors. The BCA Kit was applied to the detection of protein concentrations. Then equal amounts (20 μg) of proteins denatured by boiled water bath were separated by SDS-PAGE and then transferred onto 0.45 μm PVDF membranes (Millipore, Billerica, MA, USA). The membranes were blocked in TBST with 5% non-fat milk for 1 h and then incubated with rabbit anti-human primary antibodies against HK2 (ab227198, 1:5000 dilution, Abcam, Cambridge, MA, USA), RPN2(ab244399, 1:2000 dilution, Abcam) or β-actin(ab227387, 1:10000 dilution, Abcam) as a loading control at 4 °C overnight and goat anti-rabbit secondary antibody (ab97051, 1:10000 dilution, Abcam) at room temperature for 2 h. The signals were developed using ECL Kit (Beyotime) and the relative protein levels of HK2 and RPN2 were normalized to the control group.
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4

Sanguinarine Modulates Phosphorylated PMK-1 in Nematodes

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Nematodes were synchronized and treated for 1 day with or without 0.2 μM sanguinarine starting at L4 larvae stage. After worms were homogenized in liquid nitrogen, the homogenate was lysed on ice for 60 minutes in lysis buffer (BioTeKe). The lysates of total protein were loaded (40μg per well) and separated on a 10% SDS polyacrylamide gel. Proteins were then transferred to immobilon-PSQ transfer PVDF membrane (Millipore, Bedford, MA). Phosphorylated PMK-1 protein was detected using an anti-active p38 polyclonal antibody from rabbit (1:1000 dilution; Abcam, ab4822), anti-p38 antibody from rabbit (1:1000 dilution; Abcam, ab170099) and anti-beta actin antibody (1:1000 dilution; Abcam, ab227387). The secondary antibody was a peroxidase-coupled anti-rabbit IgG (1:20000 dilution; Abmart). Blots were developed using Super Signal chemiluminescence substrate (Pierce). Band intensities were measured using Image J software.
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5

Metformin Effects on Histone Modifications

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Nematodes were synchronized and treated for 1 day with or without 50‐mM metformin starting at L1/L2 or L4 larvae stage. After worms were homogenized in liquid nitrogen, the homogenate was lysed on ice for 60 min in lysis buffer (BioTeKe). Total proteins were loaded (40 μg per well) and separated on a 10% SDS polyacrylamide gel. Proteins were then transferred to Immobilon‐PSQ transfer PVDF membranes (Millipore, Bedford, MA). Primary antibodies against H3K4me3 (1:1,000 dilution; Abcam, ab8580), H3K9me3 (1:1,000 dilution; Abcam, ab8898), H3K27me3 (1:1,000 dilution; Abcam, ab272165), H3K36me3 (1:1,000 dilution; Abcam, ab9050), H3(1:2,000 dilution; Abcam, ab1791), p‐AMPKa (1:1,000 dilution, CST, 2535), p‐S6K (1:1,000 dilution, CST, 9205), S6K(1:1,000 dilution, CST, 2708), p‐mTOR (1:1,000 dilution, CST, 2971), mTOR (1:1,000 dilution, CST, 2972), and beta‐actin (1:1,000 dilution; Abcam, ab227387) used. The secondary antibody was a peroxidase‐coupled anti‐rabbit IgG (1:20,000 dilution; Abmart). The blots were developed using SuperSignal chemiluminescence substrate (Pierce). Band intensities were measured using ImageJ software.
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6

Western Blot Analysis of EMT Markers

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KYSE-150 and KYSE-150R cells were collected and lysed using RIPA Lysis and Extraction Buffer (Thermo Scientific), and protein concentration was measured by BCA Protein Assay Kit (Beyotime Biotechnology, Shanghai, China). The protein samples were separated by 10% SDS-PAGE and transferred to PVDF membranes (Millipore, Billerica, MA, USA). The membrane was incubated with 5% skim milk at room temperature for 2 h, then incubated with primary antibodies against E-cadherin (1:10000; ab40772, Abcam), vimentin (1:2000; ab92547, Abcam), snail (1:200; ab82846, Abcam), β-catenin (1:5000; ab227499, Abcam), Wnt3 (1:1000; ab32249, Abcam), β-actin (1:5000; ab227387, Abcam), histone H3 (1:1000; MA5-15150, Abcam) overnight at 4°C. The membrane was subsequently incubated with HRP-conjugated secondary antibodies (1:5000) at room temperature for 1.5 h. The proteins were visualized using enhanced chemiluminescence (Thermo Scientific), and the band intensity was determined by ChemiDoc MP Imaging System (Bio-Rad, Hercules, CA, USA).
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7

EGCG-Mediated NF-κB Modulation

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A549 and H1299 cells were treated with free-EGCG (12.5, 25 μM) and EGCG-NPs (12.5, 25 μM) for 48 h. They were then lysed in lysis buffer. After lysis, the samples were boiled and protein samples (40 μg) were fractionated in 10% sodium dodecyl sulfate polyacrylamide gel then transferred to a polyvinylidene difluoride membrane (Millipore, USA). After blocked with 10% nonfat milk, membranes were washed with TBST and then incubated with primary antibodies overnight at 4°C. The following primary antibodies were used: anti-NF-κB (Abcam, #ab32536), anti-P-NF-κB (Abcam, #ab86299), as well as goat anti-rabbit (Proteintech #SA100001-2). Finally, visualization of protein bands were performed using an ECL substrate reagent kit (GE Healthcare) on a Gel Doc XR imaging system (Bio-RAD, USA). β-actin (Abcam#ab227387) was used as the internal reference. The gray value of each protein was determined using Quantity One software, followed by statistical analysis.
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8

Western Blot Analysis of Bone Remodeling Markers

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Total proteins from cells and tissues were extracted, and the concentrations were determined using a bicinchoninic acid kit (Qiagen GmbH, Hilden, Germany) according to the manufacturer’s protocol. The extracted proteins were run on sodium dodecyl sulfate polyacrylamide gel electrophoresis with the voltage increasing from 80 V to 120 V. Then the proteins were transferred onto polyvinylidene fluoride membranes using the semi-dry method at 80 mV for 30–45 min. The membranes were incubated with 5% bovine serum albumin at room temperature for 1 h, and then incubated with the primary antibodies against OPG (1:1000, ab2302), receptor activator of nuclear factor kappa B (RANK, 1:1000, ab32370), RANK ligand (RANKL, 1:5000, ab32064) and β-actin (1:5000, ab227387) (all purchased from Abcam) at 4 °C overnight. Afterwards, the membranes were washed with tris-buffered saline tween (TBST) (3 × 5 min), and incubated with the corresponding secondary antibody horseradish peroxidase-labeled immunoglobulin G (ab6747, 1:10000, Abcam) at room temperature for 1 h, After 3 times of TBST washes (5 min for each), the bands were visualized using chemiluminescence reagent on a Bio-Rad Gel Dol EZ imager (Bio-Rad Laboratories, California, USA). The target band was analyzed by calculating the gray value using ImageJ software (National Institutes of Health, Bethesda, Maryland, USA).
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9

Western Blot Analysis of Colorectal Tissue

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Antibodies: Bax (ab32503, Abcam,1:5000), Bcl-2 (ab196495, Abcam, 1:1000), Ccdc85c (D263389, BBI Life Science, 1:400), Mfsd2a (D261903, BBI Life Science, 1:1000), β-actin (ab227387, Abcam, 1:5000). Secondary antibody was IgG-HRP secondary antibody (7074P2, Cell Signaling Technology, 1:5000).
Briefly, Proteins were extracted from colorectal tissue, and protein concentrations of tissues were quantified by a BCA protein assay kit (Thermo Scientific, Waltham, MA, USA). Protein were separated by 10% sodium dodecyl sulfate-polyacrylamide gel and transferred to PVDF membrane, then blocked by 5% non-fat milk in PBST buffer (PBS buffer containing 0.05% Tween-20) for 1 h at room temperature. The membranes were incubated overnight with primary antibodies at 4°C. After 3 times washing them in PBST buffer, the membranes were incubated with the secondary antibodies for 1 h at room temperature. Signals were detected by using an ECL substrate (Thermo Scientific) and exposure with the Tanon 5500 imaging system. The intensity of the bands was quantified by densitometry.
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10

Western Blot Analysis of ZEB1, AKT, and PI3K

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Cells were lysed in ice-cold radioimmunoprecipitation buffer containing protease inhibitor phenylmethylsulfonyl fluoride (1 mM). Equal protein samples (50 μg) were run on 10% sodium dodecyl sulfate -polyacrylamide gel electrophoresis (Bio-Rad, Hercules, CA, USA) and then transferred to polyvinylidene fluoride membranes (Amersham Pharmacia, Piscataway, NJ, USA). Next, western blots were probed with antibodies against ZEB1 (1:1,000; ab203829), AKT (1:1000; ab8805), p-AKT (1:10,000, ab81283), phosphoinositide-3-kinase (PI3K, 1:1000, ab191606), p-PI3K (1:1000, ab182651) and β-actin (1:5000; ab227387) (all purchased from Abcam, Cambridge, MA, USA) at 4°C overnight, and then probed with secondary antibody, horseradish peroxidase-labeled goat anti-rabbit immunoglobulin G (IgG) (1:2,000; A0208; Beyotime Institute of Biotechnology, Shanghai, China). Each sample was repeated for three times. GAPDH served as a reference for normalization. At last, immunoblots were visualized with enhanced chemiluminescence (Amersham Pharmacia) and analyzed with ImageJ V1.48 software (National Institutes of Health, Bethesda, Maryland, USA).
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