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3 protocols using fip200

1

Bone Protein Extraction and Analysis

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Protein extracts were prepared from frontal and parietal bones of one-month-old mice after cutting out the sutures. The bone tissues were immersed into liquid nitrogen, grinded to powder, and then lysed using NP40 lysis buffer (PH 8.0 Tris-HCl 20mM, NaCl 137mM, 1% NP40, 10% Glycerol, Na3VO4 1mM). Western blotting was performed and analyzed similar to our previous studies [39 (link)–41 (link)]. The following primary antibodies were used: rabbit anti-RBCC1 (FIP200) antibody (proteintech, 17250-1-AP), rabbit anti-P62 antibody (Enzolife science BML-PW9860-0100), mouse anti-LC3 antibody (Nanotools, NT-0231-100), mouse anti-vinculin antibody (Sigma-aldrich V4505), and rabbit anti-ATG5 antibody (CST, #13007).
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2

Antibody-Based Autophagy and Apoptosis Analysis

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The following antibodies were used: cleaved caspase-3 (Cell Signaling Technology), cleaved PARP (Cell Signaling Technology), LC3B (Cell Signaling Technology), β-actin (Sigma-Aldrich), FIP200 (ProteinTech Group), Atg13 (Cell Signaling Technology), BrdU (Developmental Studies Hybridoma Bank), goat anti-rabbit FITC (Jackson ImmunoResearch Laboratories). The following reagents were used: bafilomycin A1, spautin-1, paclitaxel, epirubicin, cisplatin, puromycin, BrdU, trichloroacetic acid, sulphorhodamine B, protease inhibitor cocktails, DAPI were from Sigma-Aldrich. MitoTracker Green FX (Invitrogen) and MitoTracker Red CMXRos (Invitrogen), Permount SP15-100 Toluene Solution (Fisher Scientific), DNase I (Roche).
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3

Evaluation of Autophagy Markers in Tg-Treated Cells

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Cells were harvested after 30 h of treatment with Tg, unless otherwise stated. Preparation of whole-cell lysates, SDS-PAGE, and immunoblot analysis were performed as described previously [33 (link)]. The following antibodies were used: alpha-tubulin (Abcam, ab7291), ATG5 (Cell Signaling Technology 2630), ATF4 (Cell Signaling Technology 11815), Bip/Grp78 (Cell Signaling Technology 3177), Caspase-3 (8G10) (Cell Signaling Technology 9665), Caspase-8 (1C12) (Cell Signaling Technology 9746), CHOP (Cell Signaling Technology 2895), Cleaved PARP (Asp214) (D64E10) (Cell Signaling Technology 5625), DR5 (Cell Signaling Technology 8074), FADD (G-4) (Santa Cruz sc-271748), FIP200 (Proteintech 17250–1-AP, GABARAP (Proteintech PM037), GABARAPL1 (Abcam ab86497), GABARAPL2 (Proteintech PM038), p-JNK (Cell Signaling Technology 9251), JNK (Cell Signaling Technology 9252), LC3B (Cell Signaling Technology 2775), PERK (Cell Signaling Technology 5683), XBP1s (BioLegend 647502).
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