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Mini protean 3 gel electrophoresis system

Manufactured by Bio-Rad
Sourced in United States

The Mini-PROTEAN III Gel Electrophoresis System is a laboratory equipment designed for the separation and analysis of proteins and other macromolecules using gel electrophoresis. The system comprises a casting stand, a tank, and a power supply, allowing for the efficient and reliable separation of samples.

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6 protocols using mini protean 3 gel electrophoresis system

1

Western Blot Analysis of Protein Expression

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For Western blot analyses the cell lysates were prepared and fractionated using sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), using the Mini-PROTEAN III Gel Electrophoresis System (BioRad, Hercules, CA, USA). A commercial mouse monoclonal anti-myc (sc-40, Santa Cruz Biotechnology, Santa Cruz, CA, USA) was used as the primary antibody, diluted at 1:1000. Horseradish peroxidase-conjugated antibodies against mouse IgG (#32439, Invitrogen) were diluted to 1:1000–1:4000. Chemiluminiscence detection and the densitometry for protein band quantification was performed as previously described [36 (link)]. As an additional sample loading control, the endogenous lactate dehydrogenase (LDH) protein was detected in cell extracts using a goat anti-LDH antibody diluted to 1:5000 (AB1222, Chemicon, Temecula, CA, USA) and an anti-goat IgG horse-radish peroxidase-conjugated antibody (sc-2033, Santa Cruz Biotechnology, diluted to 1:2000). RFP (transfection control) was detected using a rabbit anti-RFP antibody (#AB233, Evrogen, Moscow, Russia), diluted to 1:5000, and an anti-rabbit IgG horse-radish peroxidase-conjugated antibody (#1858415, Pierce), diluted to 1:1000.
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2

Characterization of MYOC Gene Exon 1

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To characterize the KO mutation, myoc exon 1 was amplified by PCR in a thermal cycler (BIORAD C100) using the following conditions: an initial denaturation step at 95 °C for 3 min followed by 35 cycles consisting of denaturation at 95° C for 30 s, annealing at 66 °C for 30 s and extension at 72° C for 30 s. A final extension step at 72° C for 5 min was also included. The primers (myocFw1, 5’-GGTCGCTGTCAGTACACCTTTAT-3’; myocRv1, 5’-GCAGGTCCTGAACTTGTCTGTCT-3’) were designed using the IDT PrimerQuest Tool (https://eu.idtdna.com/Primerquest/Home/Index, Integrated DNA Technologies) and the PCR products were analysed either by DNA PAGE (8%) or direct Sanger sequencing (Macrogen, Seoul, Korea). PAGE was carried out using the Mini-PROTEAN III gel electrophoresis system (BioRad). After electrophoresis, the gel was stained for 20 min in a Ethidium Bromide (46067, Sigma-Aldrich, St. Louis, MO, USA) solution (0.5 µg/L).
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3

GCAP3 Western Blot in Zebrafish

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For western blot analysis of GCAP3 in guca1c KO zebrafish, eight embryos (6 dpf) per guca1c genotype (mutant homozygote, heterozygote and wild-type) were lysed, and 60 μg of total protein were fractionated by SDS-PAGE using the Mini-PROTEAN III Gel Electrophoresis System (BIORAD, Hercules, CA, USA). Then, proteins were transferred onto Hybond ECL nitrocellulose membranes (Amersham, Arlington Heights, IL, USA) as previously described [24 (link)]. GCAP3 was detected using a commercial rabbit polyclonal primary antibody (anti-human GUCA1C, HPA041597, Sigma-Aldrich, St. Louis, MO, USA) (1:50). Horseradish peroxidase-conjugated anti-rabbit IgG (#1858415, Pierce) was uses as a secondary antibody (1:1000). Chemiluminescence detection was performed as previously described [24 (link)].
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4

Western Blot Protein Analysis Protocol

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Samples were diluted in 4× Laemmli sample buffer (Bio-Rad) (277.8 mM Tris-HCI, pH 6.8, 4.4% LDS, 44.4% (v/v) glycerol, 0.02% bromophenol blue), 5% β-mercaptoethanol (Sigma) was added prior to heating at 95°C for 5 min and loaded on 10% SDS gels. Gel electrophoresis was performed using the Bio-Rad Mini-PROTEAN 3 gel electrophoresis system (Bio-Rad Laboratories). Proteins were transferred to nitrocellulose membranes (Amersham Protran) and blocked with 5% fat-free milk powder in 1× PBS, 0.05% Tween-20 (Sigma) for 1 h at RT. Blots were incubated with primary antibodies overnight (Table 1). Blots were then washed in PBS-T and incubated with secondary antibody (anti-mouse HRP) at RT for 2 h. Membranes were washed three times with PBS-T, prior to application of ECL (Biological Industries). Chemiluminescent signal was detected with Chemi-Doc (Bio-Rad). All membranes were probed for β-tubulin as loading control.
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5

SDS-PAGE and Immunoblotting Protocol

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Cells were harvested for SDS-PAGE and immunoblotting by scraping into SDS-PAGE sample buffer containing 2% SDS, 100 mM dithiothreitol, 10% glycerol, 0.1% bromophenol blue and protease inhibitors (Complete Roche) in 50 mM Tris–HCl pH 6.8 and heating to 100 °C for 5 min. Other samples were prepared by addition of SDS-PAGE sample buffer and heating to 100 °C for 5 min. Samples were separated on 8–15% (w/v) acrylamide gels and transferred to Protran nitrocellulose membranes (Schleicher and Schuell) using a Mini-PROTEAN 3 gel electrophoresis system and Transblot system (BioRad). The immunoblots were then blocked by incubation in 5% (w/v) dried milk/0.1% (w/v) Tween-20 in Tris buffered saline (TBS) pH 7.5 for 1 h and then probed with primary antibodies diluted in blocking solution for 16 h at 4 °C. Following washing in blocking solution, they were then incubated with horseradish peroxidase-conjugated goat anti-mouse, anti-rabbit or anti-rat Igs (GE Healthcare). Immunoblots were developed using an enhanced chemiluminescence Luminata Forte Western HRP substrate system according to the manufacturer’s instructions (Millipore). Signals on immunoblots were quantified using ImageJ after scanning with an Epson Precision V700 Photo scanner essentially as described by us in previous studies [78 (link)].
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6

Western Blot Protein Detection Protocol

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Samples were diluted in 4X Laemmli sample buffer (Biorad) (277.8 mM Tris-HCI, pH 6.8, 4.4% LDS, 44.4% (v/v) glycerol, 0.02% bromophenol blue), β-mercaptoethanol (Sigma) was added prior to heating at 95 o C for 5 min and loaded on 10% SDS gels. Gel electrophoresis was performed using the BioRad Mini-PROTEAN 3 gel electrophoresis system (Bio-Rad Laboratories, Hercules, CA, USA).
Proteins were transferred to nitrocellulose membranes (Amersham TM Protran TM ) and blocked with 5% fat-free milk powder in 1XPBS, 0.05% Tween-20 (Sigma) for 1h at RT. Blots were incubated with primary antibodies overnight (Antibody Table ). Blots were then washed in PBS-T and incubated with secondary antibody (anti-mouse HRP) at RT for 2h. Membranes were washed 3 times with PBS-T, prior to application of ECL (Biological Industries). Chemiluminescent signal was detected with Chemi-Doc (BIO-RAD). All membranes were probed for -tubulin as loading control.
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