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15 protocols using ab13552

1

Neuroinflammation and Neurodegeneration Model

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Rotenone was purchased from Sigma-Aldrich, Inc. (R8875, St. Louis, MO, USA). PLX3397 (S7818) and minocycline (S4226) were purchased from Selleck (Shanghai, China). The antibody against Neu-N was purchased from EMD Millipore (MAB377, Temecula, CA, USA). The anti-ionized calcium binding adaptor molecule-1 (Iba-1) and anti-glial fibrillary acidic protein (GFAP) antibodies were purchased from Wako Chemicals (019-19741, Richmond, VA, USA) and Dako (Z0334, Santa Clara, CA, USA), respectively. The antibodies against postsynaptic density protein 95 (PSD-95, ab13552), Ser129 phosphorylated (ab51253), and total α-synuclein (ab6162) were purchased from Abcam (Cambridge, MA). In Situ Cell Death Detection Kit was purchased from KeyGEN BioTECH Corp (KGA7073, Jiangsu, China). The commercial assay kits for glutathione (GSH, S0052) and malondialdehyde (MDA, S1031S) were purchased from Beyotime Biotechnology (Shanghai, China). All other chemicals were of the highest grade commercially available.
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2

Protein Extraction and Western Blot Analysis

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Total proteins were extracted from cultured bEnd.3 cells and brain tissues using protein lysis buffer (P0013C, Beyotime), containing 1% phosphatase inhibitors (Sigma-Aldrich), and 1% protease inhibitor cocktail (Sigma-Aldrich) and centrifuged at 12,000 × g (30 min, 4 °C). The total protein concentration was determined using a BCA protein assay kit (Beyotime, P0012) and was adjusted to 3.5 mg/mL. A total of 30 μg of protein was separated by 4–10% SDS-PAGE and transferred to a polyvinylidene fluoride (PVDF) membrane. The membrane was blocked with Tris-buffered saline with Tween-20 (TBST) containing 5% milk and analyzed using monoclonal antibodies against Ki67 (1:2,000, SolA15; eBioscience), Cdk5 (1:2,000, DC 17; Santa Cruz), p-Cdk5 (1:2,000, C-7; Santa Cruz), mouse anti-glutamate receptor 1 (1:2000; ab183797, Abcam), mouse anti-synaptophysin (1:2000; S5768, Sigma-Aldrich), mouse anti-PSD95 (1:2000; ab13552, Abcam), total Tau (D1M9X, 1:2000, 46687, Cell Signaling Technology), phospho-Tau Ser199/202 (1:2000, AB9674; Sigma-Aldrich) and rabbit anti-β-actin (1:2,000, 4970; Cell Signaling Technology). Blots were scanned using Image Quant Las4000mini System. ImageJ software (NIH) was used for the mean intensity of bands.
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3

Immunofluorescence Analysis of Spinal Cord Neurons

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For immunofluorescence, spinal cord sections were pretreated in 1% Triton X-100 in PBS
for 30 min; the slices were blocked with 5% normal donkey serum in PBS for 10 min at RT
and incubated with primary antibodies overnight at 4°C. The following primary antibodies
were used: rabbit anti- P-Rex2 antibody (HPA015234, 1:200; Sigma, Munich, Germany), rat
anti-NeuN antibody (ab279297, 1:200; Abcam, Cambridge, United Kingdom), and mouse
anti-PSD95 antibody (ab13552, 1:200; Abcam, Cambridge, United Kingdom). After removing
primary antibody, the slices were washed with PBS and incubated with fluorescent
conjugated secondary antibodies for 1–1.5 h at 37°C. The sections were examined with a
confocal laser microscope (Leica, Germany)
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4

Double-Immunofluorescence of TRPV1 and PSD95

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For double-immunofluorescence of TRPV1 and PSD95 (a marker for post synaptic mechanisms), free-floating sections containing PFC were washed in PBS and then preincubated in PBS containing 5% normal goat serum for 3–4 h at RT. After preincubation, sections were incubated with polyclonal rabbit anti-TRPV1 antibody (ab31895, Abcam, dilution: 1:500), and mouse monoclonal antibody anti-PSD95 (ab13552; Abcam; 1:500) for 24 h at 4°C, after which they were rinsed 3–5 times in PBS, the sections were then incubated for 1–2 h at RT in goat anti-rabbit IgG Alexa Fluor 488 (ab150077; Invitrogen; 1:1500) and goat anti mouse IgG Alexa Fluor 647 (ab150115; Abcam; 1:1500) dissolved in blocking solution. Following the final rinsing, the slices were wet mounted onto subbed slides and subsequently dried and cover-slipped with Dako Faramount Aqueous Mounting Medium (Dako; S3025). For fluorescence imaging, tissues were visualized under ab epifluorescence IX81 microscope (Olympus), and for confocal imaging a 700-AX10 laser scanning microscope (Carl Zeiss) was used.
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5

Proteomic Analysis of Mouse Hippocampus

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The mouse hippocampus was lysed by radioimmunoprecipitation lysis buffer (Solarbio, Beijing, China, R0010) with a protease phosphatase inhibitor mixture (Solarbio, P1260). A BCA kit (Solarbio, PC0020) was applied to quantify the total protein concentration. Protein samples (40 μg per lane) were separated by 10% SDS-PAGE (Solarbio, P1200) and transferred onto polyvinylidene fluoride (PVDF) membranes (Millipore, MA, USA, IPFL00010). The membranes were blocked with 5% skim milk (Solarbio, D8340) at room temperature (1 h) and subsequently immunoblotted with primary antibodies overnight at 4 °C: IL-33 (R&D, MND, USA, 1:500, AF3626), glial fibrillary acidic protein (GFAP) (Abcam, Cambridge, UK, 1:1000, ab7260), vesicular glutamate transporter 1 (vGlut1) (Abcam, 1:1000, ab227805), postsynaptic density protein-95 (PSD95) (Abcam, 1:1000, ab13552) and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Abcam, 1:2000, ab8245). Next, 1X tris-buffered saline Tween (TBST) (Solarbio, T1081) was used to wash the membranes 3 times. They were then incubated with a secondary antibody at room temperature (40 min). Immunoreactivity was detected using enhanced chemiluminescence (Solarbio, P0018), and bands were measured using Image J analysis software (Version 1.50i, Rockville, MD, USA).
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6

Hippocampal Protein Extraction and Analysis

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Hippocampal samples were harvested and weighed (0.015–0.02 g), then homogenized in 150–200 μl of fresh, ice-cold RIPA lysis buffer (Beyotime, Nantong, China) containing protease inhibitor and phosphatase inhibitor. The samples were stirred by an electric grinder for 3 s × 4 times on the ice, crushed with an ultrasonic cell crusher for 4 s × 4 times, and centrifuged at 12000 rcf for 10 min. The supernatant was taken for protein quantification and diluted to a protein concentration of 3 μg/μl. Samples were then incubated with the following primary antibodies: anti-C3 rabbit monoclonal antibody (ab200999, Abcam, UK), anti-PSD95 mouse monoclonal antibody (ab13552, Abcam, UK), anti-SYP rabbit monoclonal antibody (ab32127, Abcam, UK), anti-NDRG2 rabbit monoclonal antibody (5667-WB, CST, USA), anti-NF-κB rabbit monoclonal antibody (ab32536, Abcam, UK), anti-p-NF-κB rabbit monoclonal antibody (3033T, CST, US), and anti-β-tubulin mouse monoclonal antibody (66240-1-lg, Proteintech, China) at 4 °C overnight.
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7

Western Blot Analysis of Raphe Nuclei Proteins

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The protein expression levels of Iba-1, C1q, cleaved caspase 3, synaptophysin, PSD95, and β-actin in raphe nuclei homogenates were evaluated using Western blotting. The protein concentrations of the homogenates were equalized, and the samples were separated by 10% polyacrylamide gel electrophoresis and transferred to polyvinylidene fluoride membranes. To minimize nonspecific binding, the membranes were blocked in 5% bovine serum albumin for 1 hour. The membranes were incubated overnight at 4°C with the following primary antibodies: Iba-1 (1:500; 061-20001, Wako Biologicals), C1q (1:50; ab71940, Abcam), cleaved caspase 3 (1:200; no. 9664S, Cell Signaling Technology), PSD95 (1:200; ab13552, Abcam), synaptophysin (1:500; ab8049, Abcam), or β-actin (1:2500; PA1-183, Thermo Fisher Scientific). After washing, the membranes were incubated with an HRP-conjugated anti-rabbit or anti-mouse antibody (GeneTex Inc., Irvine, CA) for 1 hour. The Western blotting results were visualized with an enhanced chemiluminescence advanced kit. The intensity was analyzed by ImageJ version 1.46 (NIH, Bethesda, MD, USA).
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8

Western Blot Analysis of Synaptic Proteins

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Mice were sacrificed under deep anaesthesia with 1% pentobarbital immediately after the final behavioural test. The entire tissue of the left V1 was lysed in RIPA lysis buffer and collected after centrifugation at 12,000 rpm for 15 min. Quantification of protein in supernatants was performed using the BCA assay (Thermo Fisher Scientific). Equal amounts of protein extracts were separated by SDS-PAGE and transferred to polyvinylidene difluoride (PVDF) membranes (Millipore, Bedford, MA). Membranes were blocked and probed with following appropriate antibodies according to standard procedures: ABCA1 (1:1,000, Abcam, ab7360), ApoA1 (1:1,000, Invitrogen, MIA1404), PSD-95 (1:1,000, Abcam, ab13552), Synapsin I (1:1,000, Abcam, ab64581), Synaptophysin (1:20,000, Abcam, ab32127) and β-Actin (1:1,000, Abcam, ab8226). After incubation with horseradish peroxidase (HRP)-conjugated secondary antibody for 1 h at room temperature, the bands were visualised using enhanced chemiluminescence (ECL) according to the manufacturer’s protocols. Protein quantification was obtained using ImageJ software (http://imagej.net/ImageJ) and the specific protein expression level was normalised to the level of β-actin on the same PVDF membrane.
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9

Neuronal Cell Culture Immunostaining and Blotting

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All drugs and reagents were from Sigma unless otherwise indicated. The main reagents were as follows: Neurobasal medium (Gibco), B27 Supplement (Gibco), Sulfo-NHS-LC-Biotin (Thermo Scientific), NeutrAvidin Agarose Resins (Thermo Scientific), recombinant human BDNF (R&D System), and K252a (Tocris).
The antibodies used for western blotting were ASIC1a (1:500, sc-13905, Santa Cruz) and GAPDH (1:2000, KC-5G4, KangChen). The HRP-conjugated secondary antibodies used for western blotting were goat anti-rabbit IgG (1:2000, AP132P, Millipore), rabbit anti-mouse IgG (1:2000, AP160P, Millipore), and rabbit anti-goat IgG (1:2000, AP106P, Millipore). The primary antibodies used for immunostaining were GFP (1:1000, A10262, Invitrogen), HA (1:1000, 901501, BioLegend), DsRed (1:1000, 632496, Clontech), and PSD-95 (1:1000, ab13552, Abcam). The secondary antibodies used for immunostaining were donkey anti-human IgG DyLight 550 (1:1000, SA5-10127, ThermoFisher), donkey anti-human IgG DyLight 488 (1:1000, SA5-10126, ThermoFisher), donkey anti-mouse IgG Alexa 647 (1:1000, 715-605-150, Jackson ImmunoResearch), donkey anti-rabbit IgG Alexa 568 (1:1000, A10042, Invitrogen), and goat anti-chicken IgG Alexa 488 (1:1000, A11039, Invitrogen).
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10

Immunofluorescence Labeling of Neural Tissues

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Brains were collected and fixed overnight with 4% PFA in PBS at 4°C and dehydrated in 30% sucrose in PBS at 4°C. For sections or isolated cells, cryo‐sections (40 μm thick) or coverslips were fixed with 4% PFA/PBS, and permeabilized with 0.5% Triton X‐100 for 10 min and blocked in blocking buffer (0.3% Triton X‐100, 2% Bovine Serum Albumin) for 1 h at room temperature. Primary antibodies were incubated at 4°C overnight. The primary antibodies used in this study are as follows: rabbit anti‐Arid1a (1:1,000, HPA005456, Sigma), pig anti‐Vgult1 (1:1,000, ab5905, Millipore), rabbit anti‐H3K27ac (1:1,000, ab4729, Abcam), chick anti‐MAP2 (1:1,000, Cat No.822501, Biolegend), rabbit anti‐PSD95(1:1,000, ab16659, Abcam), mouse anti‐synaptophysin (1:1,000, ab13552, Abcam), mouse anti‐Oct‐3/4 (1;1,000, Cat No. sc‐5,279, Santa Cruz), rabbit anti‐Nanog (1:1,000, Cat No. 14295–1, Proteintech), and rat anti‐BrdU (1:1,000, Cat No. ab6326, Abcam). Sections or coverslips were washed in PBS and incubated with secondary Alexa Fluor‐conjugated antibodies (Invitrogen) for 1.5 h at room temperature, washed three times in PBS, and mounted with an adhesion antifade medium. We used a confocal laser‐scanning microscope to obtain images and ImageJ to analyze the results.
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