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Rad001

Manufactured by MedChemExpress
Sourced in United States

RAD001 is a laboratory equipment product manufactured by MedChemExpress. It is a versatile instrument designed for scientific research and analysis. The core function of RAD001 is to provide precise and reliable measurements for various experimental applications. Further details on the intended use of this product are not available.

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9 protocols using rad001

1

Melanoma Cell Lines and Treatments

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In this study, we used A375 human melanoma cell lines, obtained from American Type Culture Collection (ATCC, Rockville, MD, USA). In some experiments we used also the human melanoma cell lines WM266-4 (from ATCC) and M21 (kindly provided by Dr. Antony Montgomery, The Scripps Research Institute, La Jolla, CA, USA). Melanoma cells were cultivated in Dulbecco’s Modified Eagle Medium high glucose (DMEM 4500, EuroClone, Milan, Italy) supplemented with 10% fetal bovine serum (FBS, Boerhinger Mannheim, Binger Strasse, Ingelheim am Rhein, Germany), at 37 °C in a humidified atmosphere containing 90% air and 10% CO2. Viability of the cells was determined using a trypan blue exclusion test. Cultures were periodically monitored for mycoplasma contamination using Chen’s fluorochrome test [26 (link)].
A375 melanoma cells resistant to PLX4032 were kindly provided by Laura Poliseno from University of Pisa and they were obtained as explained in Reference [27 (link)]. PLX4032-resistant A375 melanoma cells were maintained without PLX4032 overnight before the start of the experiment.
According to the experiments, cells were treated with Oleuropein glucoside (purity ≥ 90%) (Extrasynthese S.A., Lyon, Nord-Genay, France), DTIC (Sigma Aldrich, Milan, Italy), RAD001 (MedChem Express, Stockholm, Sweden) or PLX4032 (MedChem Express, Stockholm, Sweden).
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2

Migration Assay with Melanoma Cell Lines

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The migration assay was performed using 8.0 μm pore size, fibronectin-coated inserts in 24-well plates (Corning-Falcon cat#353097). Triplicates of 3 × 104 MM27 shLuc and ShcD-silenced cells were plated in the upper chamber in serum-free medium. Vehicle (DMSO) or Dabrafenib 2.5 nM (GSK2118436A, Active Biochem, Cat#A-1220), Trametinib 0.5 nM (GSK-1120212, Active Biochem, Cat#A-1258), and Everolimus 2.5 μM (RAD001, MedChemExpress, Cat#HY-10218) were added alone or in combination (Dabrafenib/Trametinib and Dabrafenib/Everolimus, same doses as single testing) to the medium. The complete medium was added to the lower chamber. After 48 h, cells that migrated to the lower surface of the inserts were stained with 0.5% Crystal Violet. Four images of each insert were acquired and analyzed with the ImageJ Software.
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3

Western Blotting Antibody Panel

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The following antibodies for the purpose of Western blotting were acquired from Cell Signaling Technologies: pAKT S473 (Catalog number 4060), PAN-AKT (#2920), Phospho-p44/42 MAPK (#4370), p44/42 MAPK (#4695), S6 Ribosomal Protein (#2317), Phospho-S6 Ribosomal Protein (#4858), Phospho-p70S6 Kinase Thr389 (#97596), p70S6 Kinase (#9202), Phospho-4EBP1 Thr37/46 (#2855), 4EBP1 (#9452). Antibodies against Beta-Actin were purchased from GeneTex (catalog number 109639). MAPK inhibitors were purchased from Tocris: FR180204 (catalog number 3706), U0126 (catalog number 1144), PD980595 (catalog number 1213). Sapanisertib (Cat# HY-13328) and Rapalink-1 (Cat# HY-111373) were purchased from MedChemExpress. Torin-1 (Cat #4247) was purchased from Tocris. PI3K/AKT/mTOR inhibitors BKM120 (Buparlisib; Novartis), AZD5363 (Capivasertib; Selleckchem), and RAD001 (Everolimus, MedChemExpress Cat# 159351–69–6) were generously provided by Dr Kathleen Millen.
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4

Antibodies for Rictor-AKT Pathway

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RAD001 and PP242 were purchased from MedChem Express (Monmouth Junction, NJ, USA). Primary monoclonal antibodies recognizing RICTOR (#9476s), phospho-AKT (Ser473, #4064s), AKT (#2920s), p70S6 kinase (#2708), phospho-PRAS40 (Thr246, #13175), PRAS40 (#2691) and GAPDH (#5174) as well as corresponding secondary antibodies were obtained from Cell Signaling Technology (Danvers, MA, USA). Primary monoclonal antibodies of phospho-p70S6 kinase (Thr389) were obtained from Cell Signaling Technology (#9206s) or Santa Cruz (sc-377529, Dallas, TX, USA).
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5

Palmitic Acid Signaling Pathway Modulation

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Palmitic acid (C16:0, PA) (Sigma, Burlington, MA, USA) was added to the cell culture medium as a PA-BSA complex, as described[8 (link)]. mTOR inhibitor RAD001 (20 nM, 16h) and S6K inhibitor NaSal (10 mM, 16h) were purchased from MedChemExpress (Monmouth Junction, NJ, USA) and Selleck (Houston, TX, USA), respectively. The proteasome inhibitor MG132 (20 μM, 6h) was purchased from A.G Scientific (San Diego, CA, USA). The lysosomal inhibitor leupeptin (50 μM, 16h) was purchased from Sigma (Burlington, MA, USA). The GSK3β inhibitor TWS119 (10 μM, 16h) was obtained from Santa Cruze (Dallas, Texas, USA). Cycloheximide (50 μM) was purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-PTEN, anti-Phospho-PTEN (Ser380), anti-p70S6K, anti-Phospho-p70S6K (T389) antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-Phospho-PTEN (Thr366) antibody was purchased from Abcam (Cambridge, MA, USA). Anti-vinculin, anti-HA, anti-WWP2 antibodies and PTEN-siRNA (EHU106441) were purchased from Sigma (Burlington, MA, USA). WWP2-siRNA (sc-40362) and control-siRNA (sc-37007) were obtained from Santa Cruze (Dallas, Texas, USA). S6K and mTOR inhibitors were added to cells for 1 h before PA treatment.
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6

Cell Viability and Apoptosis Assay Protocol

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The small molecular inhibitors RAD001 and AZD6244 were obtained from MedChem Express (Monmouth Junction, NJ, USA). Antibodies against B-cell lymphoma 2 (Bcl-2), phospho-Bcl-2, Beclin-1, ERK, phospho-ERK, p38, phospho-p38, c-Jun N-terminal kinase (JNK), and phospho-JNK were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-cleaved poly ADP ribose polymerase (PARP) and p62 were obtained from BD Biosciences (San Jose, CA, USA). Anti-LC3 and chloroquine (CQ) were purchased from Sigma-Aldrich Co. (St Louis, MO, USA). Anti-β-actin antibody was purchased from Zoonbio Biotechnology Co., Ltd (Nanjing, China). All secondary antibodies were obtained from Abgent (San Diego, CA, USA). Roswell Park Memorial Institute (RPMI)-1640 medium and trypsin were purchased from HyClone (Logan, UT, USA). Fetal bovine serum was purchased from Gibco (Thermo Fisher Scientific, Waltham, MA, USA). 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) cell kit was purchased from Beyotime Institute of Biotechnology (Shanghai, China).
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7

Preparation of Drug Compounds

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ML133 (Sigma‐Aldrich), MK2206 and RAD001 (MedChemExpress, USA) were dissolved in DMSO at working concentrations of 20, 5 and 10 nM, respectively. In addition, zacopride (Tocris Bioscience) was dissolved in pure water, and bacteria were removed with 0.22‐µm filter membranes.
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8

Molecular Signaling Pathway Analysis

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Sulforaphane, PP242, MK2206, RAD001 were purchased from Med Chem Express (Monmouth Junction, NJ, USA). Primary antibodies p-Rictor (Thr1135), Rictor, p-Akt (Ser473), Akt (pan), PRAS40, p-PRAS40 (Thr246), p-p70S6K (Thr389), p70S6K, Bax, Bcl-2, were purchased from Cell Signaling Technology (Danvers, MA, USA), and Cleaved-caspase 9 were acquired from Abcam (Cambridge, UK). The second antibody was obtained from Zhongshan Golden Bridge Biotechnology (Beijing, China).
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9

Molecular Signaling Pathway Analysis

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Sulforaphane, PP242, MK2206, RAD001 were purchased from Med Chem Express (Monmouth Junction, NJ, USA). Primary antibodies p-Rictor (Thr1135), Rictor, p-Akt (Ser473), Akt (pan), PRAS40, p-PRAS40 (Thr246), p-p70S6K (Thr389), p70S6K, Bax, Bcl-2, were purchased from Cell Signaling Technology (Danvers, MA, USA), and Cleaved-caspase 9 were acquired from Abcam (Cambridge, UK). The second antibody was obtained from Zhongshan Golden Bridge Biotechnology (Beijing, China).
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