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Vnmrs 600 spectrometer

Manufactured by Agilent Technologies
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The VNMRS 600 spectrometer is a high-performance nuclear magnetic resonance (NMR) instrument designed for advanced analytical applications. It features a 600 MHz superconducting magnet and provides precise measurements of molecular structures and properties.

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23 protocols using vnmrs 600 spectrometer

1

Synthesis and Characterization of [NiLethylamine](ClO4)2

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All chemicals and solvents used in the syntheses were of reagent grade and were used without further purification. [NiLethylamine](ClO4)2 was prepared by a reported method with minor modifications21 . Infrared spectra were measured on a Thermo Fisher Scientific Nicolet 6700 FT-IR spectrometer. Thermogravimetric analyses (TGA) were performed under N2 at a scan rate of 5 °C/min and under pure CO2 at a scan rate of 1 °C/min using a Q50 from TA instruments. XRPD data were collected using both a Bruker D2 PHASER automated diffractometer at 30 kV and 10 mA for Cu Kα (λ = 1.54050 Å), with a step size of 0.02 ° in 2θ and an ADSC Quantum-210 detector at 2D SMC with a silicon (111) double crystal monochromator (DCM) at the Pohang Accelerator Laboratory, Korea. Scanning electron microscope (SEM) images were taken using a Quanta 200 microscope (FEI) operating at 18 kV. The gas sorption data were collected by using a BELsorp-MAX. UV/Vis diffuse reflectance spectra were recorded on a Cary 5000 UV/Vis spectrophotometer. Nuclear magnetic resonance (NMR) spectra were recorded on a Varian VNMRS 600 spectrometer. Elemental analyses were conducted by UNIST Central Research Facilities centre (UCRF) in Ulsan National Institute of Science and Technology (UNIST).
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2

Structural Elucidation of P. canescens Compounds

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For structure elucidation, the P. canescens wild-type and mutant strains were cultivated on ∼80 Czapek's agar plates (∼25 ml of medium per plate, D = 10 cm) at 1 × 107 spores per plate at 26 °C for 6 days. Extraction was performed in the same manner as described above. The crude material was subjected to flash chromatography and further separated via semi-preparative reverse phase HPLC (Phenomenex Luna 5 μm C18 (2), 250 × 10 mm) with a flow rate of 5.0 ml min–1 and monitored by a UV detector at 235 nm. NMR spectra were collected on a Varian VNMRS-600 spectrometer. High-resolution electrospray ionization mass spectrum (HRESI-MS) was obtained with an Agilent Technologies 6210 time of flight mass spectrometer. Optical rotations were measured on a JASCO P-1010 digital polarimeter. The identity of previously reported compounds 15-deoxyoxalicine B, 15-deoxyoxalicine A, and decaturins A, C, D, and F (compounds 1–6, respectively) were verified by HRESIMS, UV-vis, and 1H-NMR data (Tables S3 and S4), which were in good agreement with previously published data.20 (link)–22 (link) Details of large-scale purification of compounds from each strain and spectral data are provided in ESI.
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3

Metabolomic Analysis of Whole Brain Samples

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Whole brain samples were extracted with ice-cold 2:1 methanol:chloroform. Samples were centrifuged at 8,000 × g for 20 minutes at 4°C and the supernatant was collected. Extraction was performed one more time on the pellets and the supernatants were pooled. Samples were dried down under a stream of nitrogen and lyophilized. The samples were rehydrated in deuterium oxide (D2O) for 1H NMR analysis.
1H NMR spectra of the extracts were obtained on a Varian VNMRS 600 spectrometer at 599.688 MHz at 25°C using a 9,615.4 Hz sweep width, 32,768 data points collected, and a 1.0 s relaxation delay. 64 transients were collected and the resulting free induction decay was processed with a line broadening of 0.5 Hz. Metabolite ratios for lactate, N-acetylasparate (NAA), γ-aminobutyric acid (GABA), glutamate, aspartate, and taurine were calculated by integrating the selected reference peaks (Figure 1) [22 (link)]. The area under the curve for each reference peak was standardized to the area under the curve for phosphocreatine plus creatine.
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4

NMR Spectroscopy of Polysaccharide Samples

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In total, 40 mg of polysaccharide was dissolved in 1 mL of 99.9% deuterium oxide and the sample was placed in NMR tubes. The 1H NMR and 13C NMR spectra were recorded on an NMR spectrometer (Varian VNMRS 600 spectrometer, Palo Alto, CA, USA) [38 (link)].
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5

Comprehensive Spectroscopic Characterization

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Absorption spectra: Varian Cary 100 Bio Spectrophotometer with baseline correction. Emission spectra: Varian Cary Eclipse at 20 °C: Cuvettes: Quartz cells (10 mm × 4 mm). NMR spectra: Varian VNMR-S 600 spectrometer (1H: 600 MHz, 13C: 150 MHz), equipped with 3 mm and 5 mm triple resonance inverse probes. NMR spectra were processed with the software MestReNova (Santiago de Compostela, Spain; 1H NMR, HSQC, HMBC) and Sparky (NOESY) [56 (link)]. Circular-dichroism (CD) spectra: Chirascan CD spectrometer, Applied Photophysics.
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6

Spectroscopic Characterization of Organic Compounds

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NMR data were recorded with a Varian VNMR-S600 spectrometer [600 MHz (1H), 150 MHz (13C)] at 35 °C. NMR spectra were processed with the software ACD/NMR Processor Academic Version 12.01 and are referenced to the corresponding solvent [δ(DMSO-d5) = 2.50 (1H) and 39.5 (13C); δ(CHCl3) = 7.26 (1H) and 77.2 (13C)]. Elemental analyses data were determined with a HEKAtech EURO EA combustion analyzer by Mr. Rochus Breuer (Organic Chemistry I, University of Siegen). Mass spectra (ESI) were recorded on a Finnigan LCQ Deca (U = 6 kV; working gas: argon; auxiliary gas: nitrogen; temperature of the capillary: 200 °C). Absorption spectra were obtained with a Varian Cary 100 bio spectrometer in quartz cells (10 mm) with baseline correction. Emission spectra were recorded in quartz cells (10 mm) with a Cary Eclipse spectrometer at 20 °C. CD-spectroscopic measurements were performed with a Chirascan spectrometer (Applied Photophysics) in quartz cells (1.0 mm). Melting points were measured with a Büchi 545 (Büchi, Flawil, CH) and are uncorrected.
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7

Characterization of Organic Compounds

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UV spectra were obtained by a Milton Roy Spectronic 3000 Array spectrophotometer (Rochester, NY, USA). Optical rotations were measured on a JASCO P-2000 polarimeter (Kyoto, Japan). CD spectra were recorded using a Jasco J-815 CD spectrophotometer (Kyoto, Japan). IR spectra were recorded on a NicoletTM iS50 FT-IR spectrometer (Thermo Fisher Scientific, Waltham, MA, USA) and Perkin Elmer FT-IR 1760X spectrometer (Boston, MA, USA). HR-ESI spectra were measured on a Bruker APEX II mass spectrometer (Karlsruche, Germany) and Agilent 6540 UHD Accurate-Mass Q-TOF mass spectrometer (CA, USA). NMR was recorded on a Bruker Advance NEO 400 MHz NMR spectrometer (Karlsruche, Germany) and a Varian VNMRS-600 spectrometer (Lexington, MA, USA). Medium-performance liquid chromatography (MPLC) and flash column chromatography (Flash CC) were performed by using a PuriFlash® XS 420 (Advion Inc., NY, USA), Sepacore® purification system (Buchi AG, Flawill, Switzerland), or a ceramic pump (VSP-3050; EYELA, Kyoto, Japan). Silica gel 60 (70–230 or 230–400 mesh ASTM, Merck, Darmstadt, Germany), LiChroprep® RP-18 (25–40 μm, Merck, Darmstadt, Germany), and SephadexTM LH-20 (GE Healthcare, Amersham, UK) were used as a stationary phase material for column chromatography (CC). Organic solvents (commercial grade) were redistilled prior to their use as a mobile phase composition.
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8

Oligochitosan Chemical Composition Characterization

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A detailed characterization of the commercial oligochitosan (OC) was undertaken in order to determine the chemical composition of the repetitive unit necessary to fix the quantity of nitrogen per acrylic acid (N/AA ratio) used in the materials synthesis. The deacetylation degree (DD = 83 ± 5%) was determined by solid state 15N NMR using a Varian VNMRS 600 spectrometer operating at 5 kHz using cross-polarization magic-angle spinning conditions [30 (link)]. The DD was calculated from the integration of the amide (δ = 101 ppm) and amine (10 ppm) peaks using the following formula:
Note that a similar DD was obtained from liquid 1H NMR data recorded on a Bruker 400 MHz spectrometer using the method reported by Trombotto et al. [30 (link)].
The quantity of lactate/lactic acid present in the sample was calculated from the liquid 1H NMR spectrum recorded in D2O. The amount of water was deduced from elemental analysis. The molar composition of the repetitive unit constituting the oligochitosan was then: H-(C6H11O4N)0.83(C8H13O5N)0.17-OH, 1.31(C3H6O3), 0.09(H2O), where C6H11O4N represents the deacetylated unit, C8H13O5N the acetylated unit and C3H6O3 the lactate ion.
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9

NMR Analysis of Deuterated HGA Solutions

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A D2O solution of 800 mg/L HGA was prepared (D2O solution 1). Ten microliters of 1 M NaOH solution was added to 0.8 mL of this solution (D2O solution 2). Ten microliters of 1 M NaOH solution with NaOCl·5H2O (2 wt%) was added to 0.8 mL of D2O solution of 800 mg/L HGA (D2O solution 3). Three types of D2O solutions were prepared and subjected to NMR measurements. All NMR data were recorded on a Varian VNMRS 600 spectrometer, operating at 599.936 MHz for protons. NMR spectra were acquired at 293 K using 5-mm NMR tubes. 4, 4-Dimethyl-4-silapentane-1-sulfonic acid (DSS) was used as an internal standard for the chemical-shift calibration. 1H NMR spectra were recorded using the standard pulse sequence and setting the repetition time and number of scans to 13.4 s and from 16 to 64 scans, respectively.
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10

NMR Characterization of Organic Compounds

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Nuclear magnetic resonance data were collected on a Varian VNMRS 600 spectrometer operating at 599.87 MHz for 1H, 150.84 MHz for 13C, and 60.79 MHz for 15N. Chemical shifts (δ in ppm) are given from the internal solvent and the partially deuterated residual DMSO-d6 39.5 ppm and acetone-d6 29.8 ppm for 13C; DMSO-d5 2.5 ppm and acetone-d5 2.05 ppm for 1H. External nitromethane (0.0 ppm) was used for 15N references. The 15N chemical shifts were obtained from two dimensional 1H,15N-HMBC experiments with gradient coherence selection, which were performed using a standard pulse sequence from the Varian pulse library. CH3NO2 was used as an external reference for the 15N chemical shifts. The 2D experiments gCOSY, zTOCSY, NOESY, gHSQC and gHMBC were run using the standard Varian software. All data were analysed using MestReNova 14.2.1-27684 (5 May 2021, Santiago de Compostela, Spain) software.
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