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15 protocols using airyscan lsm800

1

Microtubule Regrowth Analysis in T-cells

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Microtubule regrowth experiments were performed as described previously (61 (link)). Briefly, microtubule regrowth after tubulin depolymerization in cold shock was analyzed. WFA-treated or untreated LFA-1/ICAM-1-stimulated T-cells were washed and fixed after cold shock recovery at 37 °C for 15 s and processed for AiryScan confocal microscopy (Zeiss LSM800 AiryScan, Carl Zeiss).
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2

Sterilization and Inoculation of Seeds

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Seeds were sterilized with 10% NaClO for 15 min and then washed with ddH2O 5–6 times to remove the NaClO. Surface‐sterilized cucumber/wheat seeds were incubated with 1/2× MS solution for 24 h at 25°C before inoculation. Surface‐sterilized Arabidopsis thaliana seeds were vernalized for 3 days at 4°C in darkness before inoculation. For inoculation, seeds were treated with a bacterial suspension at 108 CFU ml−1 (colony‐forming units) for 10 min and placed on filter papers for 2 min to remove any excess bacterial suspension. Then, the seeds were transferred to a flask (3 cm in diameter and 10 cm in height) filled with 15 ml of 1/2× MS semisolid agar medium with sucrose (30 g l−1). Plants were grown in a growth chamber with a photoperiod of 16 h light/8 h dark, at 80 μmol photons m−2 s−1 and a constant temperature of 25°C. Fluorescence was examined after 5–10 days of incubation with a Zeiss inverted fluorescence microscope (Zeiss LSM 800 Airyscan, Carl Zeiss Microimaging Inc., NY, USA) at 510–535 nm for GFP.
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3

Amyloid Nanofiber Characterization via Confocal Microscopy

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To perform confocal
microscopy, ANFs were stained by ThT as an amyloid binding fluorescent
dye. A stock solution of 5 mM ThT in PBS buffer (pH 7) was prepared,
and 0.1 mL of it was added to 9.9 mL of a 2 wt % ANF dispersion to
reach a total ThT concentration of 50 μM. The dispersion was
stirred for 5 h to let the ThT bond to the ANFs and then dialyzed
in the dark to remove nonbonded ThT. The dialysate was replaced with
a fresh solution three times a day, and the absorption spectrum of
the dialysate was collected using a plate reader. The absorption spectrum
of free ThT in the water solution shows a peak at λmax = 412,
and the dialysis process was continued until no absorption signal
was detected from ThT. The ThT-stained ANFs were then utilized to
prepare aerogels for confocal microscopy. Aerogels were prepared by
ice-templating as explained in detail before but dried via freeze-drying
instead of solvent exchange to eliminate the possible effects that
acetone might have on the ThT. Confocal microscopy was performed using
a Confocal Microscope Zeiss LSM 800 Airyscan with a Plan-Apo 63×/1.40
NA Oil objective. The samples were excited using a 458 nm argon laser,
and the emission was collected between 480 and 520 nm. Images were
analyzed using the ZEN 3.4 software.
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4

Imaging Fluorescent Fusion Proteins in C. elegans

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Images of fluorescently tagged fusion proteins were captured in live C. elegans using a Zeiss LSM800 Airyscan confocal microscope (Carl Zeiss, Germany). Worms were immobilized on 2% agarose pad using a mixture of 7.5 mM levamisole (Sigma-Aldrich) and 0.225M BDM (2,3-butanedione monoxime) (Sigma-Aldrich). Images were analyzed with Zen software (Carl Zeiss) or Image J (NIH, USA).
For time-lapse imaging, animals were mounted onto 5% agarose pads and immobilized using 0.5 µl of 0.10 µmpolystyrene latex microsphere (Alfa Aesar # 427124Y). The coverslip was sealed with Vaseline (Vaseline Jelly Original), to avoid dehydration of the animals and agarose pad during imaging.
For quantification of LIN-17::GFP and DSH-1::GFP signal at the growth cones, 1.34 µm × 0.37 µm (LIN-17::GFP) or 1.54 µm × 0.46 µm (DSH-1::GFP) region of interest (ROI) were set at the tip of anterior and posterior neurites. The signals of the GFP and BFP channels from the adjacent region with the same size of ROI was used to subtract the background signal. The GFP signal was normalized by the BFP signal of the same ROI.
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5

Immunofluorescence Staining of Teratocytes

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The collected teratocytes were fixed with 4% paraformaldehyde for 20 min, and then washed three times with 1 × PBST. The fixed teratocytes were incubated with 1: 500 diluted CvT‐serpin6 polyclonal antibodies for overnight at 4°C after block with 1% bovine serum albumin (Sangon, Shanghai, China) for 2 h. The teratocytes were then incubated with 1: 1000 diluted Alexa Fluor 594‐conjugated AffiniPure Goat Anti‐Rabbit IgG (H + L) (Thermo Fisher Scientific, Waltham, MA, USA) in dark at room temperature for 2 h after washing three times. Finally, the teratocytes were placed on slides, sealed with DAPI Fluoromount‐GTM (MyBioSource, San Diego, CA, USA) and photographed with Laser scanning confocal microscope, Zeiss LSM800 Airyscan (Zeiss, Oberkochen, Germany).
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6

Confocal Imaging of T-Cell Adhesion

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Confocal imaging of T-cells was performed as described previously (61 (link)). Briefly, untreated or WFA-treated T-cells adhering on rICAM-1-coated glass coverslips were fixed (3% (v/v) formaldehyde in PBS) and permeabilized (0.3% Triton X-100 in PBS). Cells were fluorescently labeled with appropriate primary and secondary antibodies, as indicated in the corresponding figure legends. After washing, coverslips were mounted on glass slides using fluorescence mounting medium (Dako). Confocal imaging was carried out by a laser scanning microscope (Zeiss LSM800 AiryScan, Carl Zeiss, Inc) using a 63×/1.4 N.A. oil immersion objective lens. At least five different microscopic fields were analyzed for each sample using ZEN lite 2.1 imaging software (Carl Zeiss).
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7

Imaging Neuronal Connectivity in C. elegans

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Images of fluorescently tagged fusion proteins were captured in live C. elegans using a Zeiss LSM800 Airyscan confocal microscope (Carl Zeiss, Germany) with oil immersion lens 63x magnification (Carl Zeiss, Germany). Worms were immobilized on 2.5% agarose pad using a mixture of 7.5 mM levamisole (Sigma-Aldrich) and 0.225 M BDM (2,3-butanedione monoxime) (Sigma-Aldrich). Images were analyzed with Zen software (Carl Zeiss) and ImageJ (NIH, USA). 20-26 Z-stack images were taken for each animal to encompass the cell bodies, axons and synapses of the DA8 and DA9 neurons. The definition of DA8/DA9 synaptic overlap was defined by the distance between the most anterior DA9 synapse and the most posterior DA8 synapses (Mizumoto and Shen, 2013; Chen et al., 2018) . L4.4-L4.5 larval stage animals, judged by the stereotyped shape of the developing vulva (Mok et al., 2015) were used for quantification.
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8

SARS-CoV-2 Infection in 293T-ACE2 Cells

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293T-ACE2 cells were cultured and infected with SARS-CoV-2 as described above. When indicated, cells were treated with 50 μM of GRL0617 (MedChemExpress #HY-117043) at the time of infection. Cultures were rinsed with PBS and fixed with 4% paraformaldehyde (electronic microscopy grade; Alfa Aesar) in PBS for 10 min at room temperature, treated with 50 mM NH4Cl for 10 min, permeabilized with 0.5% Triton X-100 for 15 min, and blocked with 0.3% BSA for 10 min. Cells were incubated with primary and secondary antibodies for 1 h and 30 min, respectively, in a moist chamber. Nuclei were labeled with Hoechst dye (Molecular Probes). Images were acquired using a LSM700 (Zeiss) confocal microscope equipped with a 63X objective or by Airyscan LSM800 (Zeiss). Image analysis and quantification was performed using ImageJ (Fiji) v2.1.
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9

Live Imaging of Meiotic Chromosome Dynamics

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GV-stage oocytes were cultured in vitro for 2 h, when the majority had completed GVBD. Oocytes with GVBD were then incubated with 100 nM SiR-DNA (CY-SC007, Cytoskeleton) in M2 medium to label chromosomes. Next, 4-dimensional imaging was performed using a Zeiss Airyscan LSM 800 confocal equipped with a 40x water immersion objective and Axiocam camera, or a 3i Spinning Disk confocal equipped with a 63x oil immersion objective lens and Flash 4.0 sCMOS camera. Both were equipped with a 37°C temperature-controlled environment. Chromosomes were imaged with 18 z-sections and 2.0μm
z-resolution. The imaging time between consecutive frames was 6 min. To capture the events of chromosome alignment and segregation, imaging was performed between 9 and 12 h of culture. SiR-DNA containing M2 medium was used throughout the imaging procedure.
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10

Immunostaining of Meiotic Chromosome Spreads

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Meiotic cells were collected at indicated time points and fixation and chromosome spread was performed essentially as described using 4% paraformaldehyde42 (link). Immunostaining was performed as described42 (link). Primary antibodies were anti-PCNA (Abcam; ab70472, 1:100), anti-Zip3 antibody (a gift from Dr. Akira Shinohara, 1:400) and anti-Zip1 (a gift from Dr. Scott Keeney, 1:400); all incubated overnight at room temperature in 100 ul TBS/BSA buffer (10 mM Tris PH7.5, 150 mM NaCl, 1% BSA) Secondary antibodies were anti-rabbit 568 (A11036 Molecular Probes, 1:1000), anti-mouse 488 (A11029 Molecular Probes, 1:1000), anti-rabbit 647 (A21245 Invitrogen), and anti-guinea pig 555 (A21435 Life Technologies); all for 1 hr at 37˚C. Coverslips were mounted with Prolong Gold antifade reagent (Invitrogen, P36930). Digital images were captured using a Zeiss Airyscan LSM800 with Axiocam and analyzed using Zen (blue edition); or a Zeiss Axioplan II microscope, Hamamatsu ORCA-ER CCD camera and analyzed using Volocity software. Co-localization of protein foci was assigned to overlapping foci. Random colocalization (levels of colocalization by chance) were estimated by rotating the PCNA and Zip3 channels by 90° relative to one another and requantifying focus colocalization. Scatterplots were generated using the GraphPad program in Prism.
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