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12 protocols using ab86707

1

Ferroptosis Pathway Modulation Assay

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Dihydroartemisinin (DHA, D140839, purity: ≥98%), hemin (H140872) and chloroquine (CQ, C193834) were purchased from Aladdin (China). Dimethyl sulfoxide (DMSO, A503039) and ferric ammonium citrate (FAC, A500061) were got from Sangon Biotech (China). Deferoxamine (DFO, D9533) and protoporphyrin IX zinc(II) (ZnPPIX, 282820) were purchased from Sigma-Aldrich (United States). Z-VAD-FMK (HY-16658B), ferrostatin-1 (Fer-1, HY-100579) and doxorubicin hydrochloride (DOX, HY-15142) were purchased from MedChemExpress (United States). And the antibody to ACSL4 (ab155282), GPX4 (ab125066), xCT (ab175186), HO-1 (ab82585), TfR1 (ab84036), FTH1 (ab65080) and NCOA4 (ab86707) were all purchased from Abcam (United Kingdom). Anti-β-actin and goat anti-rabbit IgG H&L were purchased from Bioker (China).
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2

Protein Expression Analysis in Cardiac Tissues

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Cardiac tissues and cardiomyocytes extracts were used for Western blot analysis. The equal amount of protein samples obtained from tissues or cells were separated by SDS-PAGE electrophoresis and then transferred to PDVF membrane. The membranes were incubated with the following primary antibodies: USP14 (1191S, CST, USA), Beclin1 (3738, CST), LC3 (12741, CST), NCOA4 (ab86707, Abcam) and FTH1 (3998, CST) and transferrin receptor 1 (TfR1; ab1086, Abcam). Secondary antibodies were incubated and then visualized with the ECL Plus assay Kit (K002, Affinity, USA).
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3

Immunoblotting Analysis of Autophagy and Iron Homeostasis Proteins

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The tumor and A549 cell lysates were prepared, washed with cold PBS, resuspended in a lysis buffer and sonicated the lysate. The proteins were separated on 10–15% SDS gels and transferred to nitrocellulose membranes. After incubation with 1:1,000 primary antibody dilution buffer for 1 h, Goat Anti-Mouse IgG (H + L) HRP (1:5,000, No. S0002, Affinity) or Goat Anti-Rabbit IgG (H + L) HRP (1:5,000, No. S0001, Affinity) were used as secondary antibodies and developed by enhanced chemiluminescence. The antibodies used for immunoblotting were ubiquitin-specific peptidase 14 (USP14, 1191S, CST, USA), Beclin 1 (3,738, CST, USA), nuclear receptor coactivator 4 (NCOA4, ab86707, Abcam, United Kingdom), microtubule-associated protein light chain 3 (LC3 I and LC3 II 12741, CST, USA), ferritin heavy chain 1 (FTH1, 3,998, CST, USA), transferrin receptor 1 (TfR1, ab1086, Abcam, United Kingdom), glutathione peroxidase 4 (GPX4, ab125066, Abcam, United Kingdom), activating transcription factor4 (ATF4, ab184909, Abcam, United Kingdom) and β-tubulin (2146S, CST, USA).
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4

Western Blot Analysis of GPX4, NCOA4, and β-Actin

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The total cell lysis was obtained by adding radioimmunoprecipitation assay (RIPA) lysis buffer (Bio-Rad Laboratories, Inc.) to cells. For the pancreatic tissues, they were washed and homogenized in RIPA buffer. After measuring the protein concentrations by using a bicinchoninic acid Protein Assay Kit (Bio-Rad Laboratories, Inc.), the proteins were separated on 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis, followed by blotting on polyvinylidene difluoride membrane (Millipore Corp., Bedford, MA, USA). Then, the membranes were blocked with 5% BSA, incubated with the primary and secondary antibodies, and developed using an ECL system (Bio-Rad Laboratories, Inc.). Details of the primary antibodies are as follows:
Anti GPX4, Abcam, Ab125066;
Anti NCOA4, Abcam, Ab86707;
Anti β-actin, Abcam, Ab8226.
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5

Protein Expression Analysis by Western Blot

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Protein (30 μg) was analyzed by SDS-PAGE and transferred to a polyvinylidene difluoride membrane. Proteins were detected using primary antibodies, anti-NCOA4 (ab86707, 1:500; Abcam, Cambridge, UK), anti-glutathione peroxidase 4 (GPx4) (ab125066, 1:1,000; Abcam), anti-light chain 3 beta (LC3B) (NB600-1384, 1:1,000; Novus Biologicals, CO), anti-P62 (sc-28359, 1:500; Santa Cruz Biotechnology, Santa Cruz, CA), anti-ferritin (ab75973, 1:1,000; Abcam), anti-FTH (sc-376594, 1:1,000; Santa Cruz Biotechnology), and GAPDH (FL-335, 1:500; Santa Cruz Biotechnology). Secondary antibodies were anti-mouse IgG (sc-2005, 1:2,000; Santa Cruz Biotechnology) for P62 and anti-rabbit IgG (sc-2004, 1:2,000; Santa Cruz Biotechnology) for NCOA4, GPx4, LC3B, ferritin, FTH, and GAPDH. ECL Plus blotting detection reagents (GE Healthcare, Chicago, IL) were used according to the manufacturer’s instructions.
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6

Western Blot Analysis of Autophagy Markers

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Radioimmunoprecipitation assay buffer (RIPA) was applied to lyse cells. Total proteins were then harvested and quantified with bicinchoninic acid assays (Beyotime, Shanghai, China). The target proteins were separated through 10% SDS-PAGE and transferred to polyvinylidene fluoride membranes (Merck Millipore, Burlington, MA, USA). The membranes were blocked with nonfat milk, incubated with primary antibodies, and then incubated with secondary antibody diluted at a ratio of 1:10,000 (Jackson ImmunoResearch, West Grove, PA, USA). The primary antibodies were anti-LC3B (2775, Cell Signaling Technology, Beverly, MA, USA), anti-p62 (88588, Cell Signaling Technology), anti-HuR (ab28660, Abcam, Cambridge, MA, USA), anti-SFRS1 (ab133689), anti-FMRP (ab17722), anti-ALKBH5 (ab195377), anti-IGF2BP1 (ab82968), anti-LIN28A (ab46020), anti-FTH1 (ab65080), anti-NCOA4 (ab86707), anti-BCL-2 (ab32124), anti-BECN1 (ab62557), and anti-GAPDH (ab9485). The protein signals were visualized with enhanced chemiluminescence detection reagents (ECL, Millipore, Burlington, MA, USA) and quantified with Image Lab software (Bio-Rad, Hercules, CA, USA).
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7

In Vitro and In Vivo SiO2 Particle Preparation

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Dihydroquercetin (DHQ) (Cat#480-18-2, purity above 98 percent) was purchased from Aladdin Biochemical Technology Co., Ltd. (Shanghai, China). Erastin (Cat#E7881) and rapamycin (Cat#53123-88-9) were purchased from Sigma Aldrich (Billerica, MA, United States). The SiO2 (Cat#S5631) particles (approximately 80% diameter: 1–5 μM) were purchased from Sigma-Aldrich and were filtered by sedimentation in accordance with the law of Stokes, subjected to acidic hydrolysis, and baked throughout the night (200°C, 16 h). The SiO2 particles were prepared for use in both in vivo and in vitro experiments. 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT) (#BS350B) as well as trypan blue exclusion assay kit (#BL707A) were obtained from Biosharp (Anhui, China). Antibodies against GPX4 (ab125066), ferritin heavy chain 1 (FTH1) (ab65080), NCOA4 (ab86707), and microtubule-related protein 1A/1B-light chain 3 (LC3) (ab192890) were all purchased from Abcam Technology (Abcam, Cambridge, United Kingdom). Antibodies against fibronectin (#26836), collagen I (#72026), alpha-smooth muscle actin (α-SMA) (#19245), and GAPDH (#5174), were acquired from Cell Signaling Technology Inc. (Danvers, MA, United States). A secondary antibody was obtained from Proteintech Biotechnology (Wuhan, China).
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8

Establishing Renal Cancer Cell Culture

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We purchased renal cancer cell lines ACHN from the American Type Culture Collection (Manassas, VA, USA). ACHN cells were cultured in Eagle’s Minimum Essential Medium enriched with 10% Fetal Bovine Serum (FBS) along with 1% penicillin/streptomycin under 37°C along with 5% CO2 conditions.
G-CLONE supplied the small chemicals sorafenib (GS0220) along with sodium nitroprusside (GN0200).
Sigma-Aldrich provided us with rapamycin (V900930). ABCAM supplied antibodies to ACSL4 (ab227256), beta-tubulin (ab6046), Beclin-1 (ab210498), LC3 (ab192890), FTH (ab183781), ATG12 (ab155589), and NCOA4 (ab86707). Secondary antibodies linked to HRP, as well as chemiluminescent reagents, were bought from Santa Cruz Biotech (Dallas, TX, USA).
Initially, all chemicals were dispersed in dimethylsulfoxide (DMSO) as a stock solution. The figure legends indicated the chemical treatment duration along with the final levels
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9

Western Blot Quantification of Protein Targets

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Total lysates were prepared according to the manufacturer’s recommendations (Beyotime Institute of Biotechnology, Shanghai, China). Protein concentrations were measured with the BCA protein assay according to the manufacturer’s instructions (Beyotime Institute of Biotechnology, Shanghai, China). Equal amounts (20 μg-40 µg) of protein were separated by 8% sodium dodecyl sulfate–polyacrylamide gel electrophoresis and transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, Billerica, MA). The membranes were incubated overnight at 4°C with mouse anti-GAPDH (ab8245, Abcam), mouse anti-β-actin (66009-1-Ig, Proteintech), rabbit anti-NCOA4 (ab86707, Abcam), rabbit anti-ferritin (ab65080, Abcam), rabbit anti-Ptgs2 (#12282, CST), rabbit anti-MMP9 (ab38898, Abcam) and rabbit anti-MMP12 (22989-1-AP, Proteintech) antibodies. After several washing steps, the membrane was incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies at room temperature for one hour. Detection was performed with the Immobilon ECL system (Millipore, S.p.A., Italy). Three independent experiments were carried out. Densitometric analyses of the bands were performed with ImageJ software.
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10

Antibody and Reagent Inventory for Ferroptosis Research

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The antibodies to ACTB (66009-1-Ig), PARP1 (13371-1-AP), DHODH (14877-1-AP), G6PD (25413-1-AP), and solute carrier family 11 member 2 (SLC11A2, also known as DMT1; 20507-AP) were obtained from Proteintech Biotechnology. The antibodies to SLC25A22 (ab137614), GPX4 (ab125066), solute carrier family 7 member 11 (SLC7A11; ab216876), ACSL4 (ab155282), and NCOA4 (ab86707) were purchased from Abcam. The antibodies to SCD (A16429) were obtained from ABclonal.
The antibodies to AMPKα (5831) and phospho-AMPKα (Thr172; 2535) were obtained from Cell Signaling Technology. RSL3 (S8155), ferrostatin-1 (S7243), liproxstatin-1 (S7699), necrostatin-1 (S8037), Z-VAD-FMK (S7023), erastin (S7242), STS (S1421), OA (S4707), and AICAR (S1802) were purchased from Selleck Chemicals. A939572 (T4515) was purchased from TOPSCIENCE. Oxalacetic acid (328-42-7) was purchased from MACKLIN. GSH monoethyl ester (353905) and NAC amide (A0737) were purchased from MilliporeSigma. BODIPY 581/591 C11 (D3861) was obtained from Thermo Fisher Scientific.
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