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4 protocols using plan apochromat 63 na 1.40 objective

1

Immunofluorescence Staining of Isolated HSCs

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Isolated HSCs were spread on glass slides using a CytoSpin4 centrifuge (Thermo Scientific, Waltham, MA). For immunofluorescence staining, cells were grown on poly-D-lysine–coated culture slides (BD Pharmingen, San Diego, CA), washed in PBS, fixed in PBS containing 4% paraformaldehyde, permeabilized in 0.5% Triton X-100, and blocked in PBS containing 5% bovine serum albumin. Cells were incubated with indicated primary antibodies for 2 hours at room temperature, washed with PBS, and incubated with Alexa-568 and Alexa-488-conjugated secondary antibodies for 1 hour (Life Technologies, Carlsbad, CA). Cells were then washed with PBS and mounted in Vectashield mounting medium with 4,6-diamidino-2-phenylindole (Vector Labs, Burlingame, CA). Images were acquired from a Zeiss AxioImager M2 microscope system equipped with a Plan-Apochromat 63×/NA 1.40 objective, an AxioCamMRm CCD camera, and AxioVision software (Carl Zeiss, Oberkochen, Germany). Anti-γH2AX (05-636, EMD Millipore, Billerica, MA) and anti-phospho-histone H3 (06-570, EMD Millipore, Billerica, MA) antibodies were purchased from the indicated vendors. The anti-TRF1 was a kind gift from Dr. Titia de Lange. Results presented in figures are representative examples for at least two replicated experiments using different cell lines or mice. The exact n number is documented in figure legends.
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2

Immunofluorescence Staining of Isolated HSCs

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Isolated HSCs were spread on glass slides using a CytoSpin4 centrifuge (Thermo Scientific, Waltham, MA). For immunofluorescence staining, cells were grown on poly-D-lysine–coated culture slides (BD Pharmingen, San Diego, CA), washed in PBS, fixed in PBS containing 4% paraformaldehyde, permeabilized in 0.5% Triton X-100, and blocked in PBS containing 5% bovine serum albumin. Cells were incubated with indicated primary antibodies for 2 hours at room temperature, washed with PBS, and incubated with Alexa-568 and Alexa-488-conjugated secondary antibodies for 1 hour (Life Technologies, Carlsbad, CA). Cells were then washed with PBS and mounted in Vectashield mounting medium with 4,6-diamidino-2-phenylindole (Vector Labs, Burlingame, CA). Images were acquired from a Zeiss AxioImager M2 microscope system equipped with a Plan-Apochromat 63×/NA 1.40 objective, an AxioCamMRm CCD camera, and AxioVision software (Carl Zeiss, Oberkochen, Germany). Anti-γH2AX (05-636, EMD Millipore, Billerica, MA) and anti-phospho-histone H3 (06-570, EMD Millipore, Billerica, MA) antibodies were purchased from the indicated vendors. The anti-TRF1 was a kind gift from Dr. Titia de Lange. Results presented in figures are representative examples for at least two replicated experiments using different cell lines or mice. The exact n number is documented in figure legends.
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3

Confocal Imaging and Analysis Protocol

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Confocal imaging was performed with an LSM 780 microscope (Carl Zeiss) with a plan apochromat 63×, NA 1.40 objective. The images were analysed with Imaris (Bitplane) or ImageJ software.
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4

Immunofluorescence Staining and Western Blotting

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Whole-cell lysate preparation and western blotting were performed as previously described.22 (link), 24 (link) For immunofluorescent staining, cells were grown on poly-D-lysine-coated culture slides (BD Pharmingen, San Diego, CA, USA), washed in phosphate-buffered saline (PBS), fixed in PBS containing 4% paraformaldehyde, permeabilized in 0.5% Triton X-100 and blocked in PBS containing 5% bovine serum albumin. The cells were incubated with indicated primary antibodies for 2 h at room temperature, washed with PBS and incubated with Alexa-568- and Alexa-488-conjugated secondary antibodies for 1 h (Invitrogen). Cells were then washed with PBS and mounted in Vectashield mounting medium with 4,6-diamidino-2-phenylindole (Vector Laboratories, Burlingame, CA, USA). Images were acquired from a Zeiss AxioImager M2 microscope system equipped with a Plan-Apochromat 63 × /NA 1.40 objective, an AxioCam MRm CCD camera and AxioVision software (Carl Zeiss, Oberkochen, Germany). Anti-Chk2 total (Cell Signaling, Beverly, MA, USA), anti-phosphorylated Chk2 at Thr68 (Cell Signaling), anti-phospho-histone H3 (EMD Millipore, Billerica, MA, USA), anti-β-actin (Sigma) and anti-Brca1 total (Santa Cruz, Dallas, TX, USA) antibodies were purchased from the indicated vendors. Antibodies against total and phosphorylated forms of DNA-PKcs were described previously.22 (link)
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