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Rabbit anti dperk

Manufactured by Cell Signaling Technology

Rabbit anti-dpERK is a primary antibody that specifically recognizes the dually phosphorylated form of extracellular signal-regulated kinase (ERK). It is used for the detection and quantification of activated ERK in various applications such as Western blotting, immunohistochemistry, and flow cytometry.

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9 protocols using rabbit anti dperk

1

Antibody Panel for Subcellular Markers

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The following primary antibodies were used in this study: rat anti-DN cadherin (1:20; DHSB DN-EX#8), rat anti-EGFR (1:1,000, from B Shilo), rabbit anti-dpERK (1:100; Cell Signaling), mouse anti-NC82 (1:100; DSHB), Rabbit anti Rab5 (1:500; Abcam), Rat anti Rab11 (Dollar et al., 2002 (link), 1:500).
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2

Fluorescent and DAB Immunostaining of Drosophila Embryos

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Embryos were formaldehyde-fixed, and a standard immunohistochemical protocol was used for fluorescent- or DAB-visualized immunostaining as described previously [17 (link)]. The primary antibodies used were rabbit anti-Vasa (1:2000; gift of Paul Lasko), rat anti-Vasa (1:1000; gift of Paul Lasko), rabbit anti-pH3 (1:1000; Upstate Biotechnology), rabbit anti-CycB (1:500; gift of Jordan Raff), mouse anti-H5 to detect pSer2 (1:250; Research Diagnostics, Inc.), H3meK4 (1:500; gift of C. David Allis), rat anti-Twist (1:500; gift of Eric Wieschaus), rabbit anti-dpERK (1:100; Cell Signaling Technology), sheep anti-GFP (1:1,000; Bio-Rad), sheep anti-digoxigenin (DIG) (1:125; Roche), and mouse anti-biotin (1:125; Jackson Immunoresearch). Fluorescent immunostaining employed Alexa-Fluor secondary antibodies used at 1:500 (ThermoFisher), and DNA was labeled using either DAPI (10 ng/mL, ThermoFisher Scientific) or Hoescht (3μg/ml, Invitrogen). For DAB staining, horse radish peroxidase (HRP) secondary antibodies (Jackson Immunoresearch) were used 1:1000. Stained embryos were mounted using Aqua Poly/mount (Polysciences) on slides. At least three independent biological replicates were used for each experiment.
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3

Immunostaining and IF/FISH Protocol

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Immunostaining and IF/FISH were carried out as described previously (Zimmerman et al. 2013 (link)). Primary antibodies used were: mouse anti-Broad core (Developmental Studies Hybridoma Bank [DSHB] 25E9.D7-concentrate, 1:500); rat anti-DE-cadherin (DSHB DCAD2- concentrate, 1:50); mouse anti-Gurken (DSHB 1D12-concentrate, 1:200); rabbit anti-Capicua (Kim et al. 2011 (link), 1:2000 in D. melanogaster; 1:500 in S. lebanonensis); rabbit anti-P-Mad (a gift from T. Jessell’s lab; 1:2000 in both species); rabbit anti-dpERK (Cell Signaling, 1:100). Alexafluor 488-, 568-, and 647-conjugated secondary antibodies (Molecular Probes/Invitrogen) were used at dilutions between 1:200 and 1:500. DAPI was used at a concentration of 1 αg/ml. Probes for FISH were diluted 1:500 in HYB mix.
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4

Antibody Staining and FISH Protocols

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Antibody staining and FISH protocols were performed as described elsewhere32 . Rabbit anti-dpERK (1:100; Cell Signaling Technology, 4370S), rabbit anti-ERK (1:100; Cell Signaling Technology, 4695S), rabbit anti-MEK (1:100; Cell Signaling Technology, 8727S), sheep anti-GFP (1:1000, Bio-Rad, 4745-1051), rabbit anti-GFP (1:1000, Life Technologies, A11122), sheep anti-digoxigenin (DIG) (1:125; Roche), and mouse anti-biotin (1:125; Jackson Immunoresearch) were used as primary antibodies. DAPI (1:10,000; Vector laboratories) was used to stain for nuclei, and Alexa Fluor conjugates (1:500; Invitrogen) were used as secondary antibodies.
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5

Western Blot Analysis of Embryonic Proteins

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Western blot was performed as described previously (Tien et al., 2015 (link)). Briefly, RNAs encoding tagged proteins were injected into 2- to 4-cell stage embryos. Embryonic lysate was obtained at gastrula stages by lysing embryos with cold buffer containing 50 mM Tris–HCl, pH 7.5, 150 mM NaCl, 1mM EDTA, 10% glycerol and 0.5% Triton X-100. The lysate was either loaded on the SDS–PAGE directly (for the dpErk assay) with the 2× SDS gel-loading buffer (100 mM Tris.Cl, pH6.8, 200mM DTT, 4% SDS, 0.2% bromophenol blue, 20% glycerol) or subjected to the co-IP assay. Western blot was performed using rabbit anti-Flag (1:3000, Sigma), rabbit anti-HA (1:3000, Cell Signaling Technology), rabbit anti-dpErk (1:4000, Cell Signaling Technology), rabbit anti-GFP (1:3000, Cell Signaling Technology), or mouse anti-p-threonine (1:2000, Cell Signaling Technology) antibodies. Quantification was performed using NIH ImageJ software. The Student’s t-test was used to assess the statistical significance in differences between YWHAZ and YWHAZ(S230W) in dose-response experiments shown in Figure 4.
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6

Comprehensive Larval Dissection and Staining

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Third instar larvae were dissected in 1xPBS and fixed in 4% paraformaldehyde (PFA) for 20 min and stained. For dpERK staining, third instar larvae were dissected in cold 1xPBS and immediate fixed in 8% PFA for 20 min and followed with 10 min ice-cold ethanol treatment in −20 °C before further step. Samples were incubated with primary antibodies at the following dilutions: chicken anti-GFP (1:1000, Abcam, ab13970), rabbit anti-phospho-Histone H3 (Ser10) (1:200, Cell signaling, #9701), rabbit anti-Dcp1 (1:100, Cell signaling, #9578), mouse anti-WASH (1:5, Developmental Studies Hybridoma Bank(DSHB), P3H3) mouse anti-MMP1 (1:50, DSHB, cocktail 1:1:1 of 5H7B11, 3B8D12), mouse anti-Ptp10D (1:50, DSHB, cocktail 1:1 of 8B22F5 and 45E10), rabbit anti-aPKCζ (C-20) (1:250, Santa Cruz Biotechnology (SCBT), sc-216,), mouse anti-dEGFR (1:100, Sigma, E2906), guinea pig anti-capicua41 (1:1000, a kind gift from Edgar’s Lab), Alexa FluorTM Phalloidin 647 (1:50, Thermo Fisher, A22287), rabbit anti-ß-galactosidase (1:150, Cappel Laboratories, #0855976), rabbit anti-dpERK (1:200, cell signaling, #4370) guinea pig anti-DIAP159 (link) (1:200, a kind gift from Meier Pascal’s lab).
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7

Immunohistochemical Analysis of Intestinal Tissues

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The intestines from female adults were dissected in cold PBS and fixed immediately in PBS containing 4% (weight/vol) paraformaldehyde. Samples were then washed in PBS with 0.1% Triton X-100 (vol/vol) three times, blocked in PBTB [PBT containing 5% (vol/vol) normal goat serum], and incubated with primary antibodies overnight. The following primary antibodies were used: rabbit anti-Clbn (1:400), mouse anti-Prospero (1:200, Developmental Studies Hybridoma Bank), rabbit anti-Pdm1 (1:400), mouse anti-Armadillo (1:50, Developmental Studies Hybridoma Bank), rabbit anti-β-galactosidase (1:200, Promega), rabbit anti-phospho–histone-H3 (1:200, Millipore), rabbit anti-H2AvD pS137 (1:200, Rockland), rabbit anti-dpERK (1:200, Cell Signaling Technology), Alexa-Fluor-555-conjugated Phalloidin (1:500, Thermo Fisher Scientific). After three washes with PBT, secondary anti-rabbit or anti-mouse fluorescence antibodies, including Alexa 488 and 555 (1:400, Cell Signaling Technology), were used. Samples were mounted and analyzed on a Olympus FV1000 confocal laser-scanning microscope. The images were processed using Adobe Photoshop, Illustrator, and ImageJ.
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8

Quantitative Imaging of dpErk Signaling

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Rabbit anti-dpErk (1:100; Cell Signaling), sheep anti-GFP (1:1000, Bio-Rad), sheep anti-digoxigenin (DIG) (1:125; Roche), and mouse anti-biotin (1:125; Jackson Immunoresearch), rat anti-mCherry (1:1000; Life Technologies) and rat anti HA (1:100, Roche # 11-867-423-001) were used as primary antibodies. DAPI (1:10,000; Vector laboratories) was used to stain for nuclei, and Alexa Fluor conjugates (1:500; Invitrogen) were used as secondary antibodies. Fluorescent imaging was done with a Nikon A1-RS scanning confocal microscope with a 20x objective. For pairwise comparisons of wild type and mutant backgrounds, embryos were collected, stained, and imaged together under the same experimental conditions. Error bars represent the standard error of the mean of embryo ages (x-axis) and normalized dpErk intensities (y-axis).
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9

Imaging of Drosophila Imaginal Discs

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The following antibodies used were: rabbit anti-aPKC (1:500; Santa Cruz); rat anti-crb (1:500; gift from E.Knust); mouse anti-Dlg (1:500; Hybridoma Bank); rabbit anti-dpERK (1:200; Cell signalling); goat anti-GFP (1:500; Abcam); rabbit anti-RFP (1:300; Life Technologies); Phalloidin TRITC (1:200; Sigma Aldrich); mouse anti-Patched (1:100; Hybridoma Bank); rat anti-Srp (1:500 made in the Casanova lab). The TUNEL assay was performed using the In situ Cell Death Detection Kit (Roche). Cy2, Cy3 and Cy5-conjugated secondary antibodies were from Molecular Probes and were used at 1:200 dilutions, and discs were mounted in Vectashield containing DAPI. Confocal images were acquired with a Leica SP5. Images were analysed with Fiji software [National Institutes of Health (NIH) Bethesda, MD] and assembled into figures using both Fiji and the Adobe Photoshop software.
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