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Rnasol

Manufactured by Merck Group

RNAsol is a reagent designed for the isolation and purification of RNA from a variety of biological samples. It utilizes a guanidinium-based solution to effectively lyse cells and denature proteins, allowing for the efficient extraction and recovery of high-quality RNA.

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2 protocols using rnasol

1

Telmisartan Modulates Aortic Transcriptome

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Mice were mice treated with telmisartan for 3 weeks, their thoracic aortas placed in 400ul of RNAsol (Sigma Aldrich) and homogenized (OMNI International). RNA was extracted after overnight precipitation in isopropanol and resuspended in RNAse free water + 1:20 superase. RNA sample integrity was tested as previously described using the Agilent Bioanalyzer 210025 (link). All computational analyses of RNA-seq data were performed in R (v 3.6.1). Genes with less than 2 counts per million (CPMs) in at least two samples were removed. Batch correction was applied using Combat-seq under the sva package (v. 3.35.2) with genotype and treatment specified as biological covariates26 . Batch-adjusted data were processed and analyzed using DESeq2 (v 1.24.0)27 with a design formula accounting for genotype, treatment, and their interaction including normalization, principal component analysis (PCA), and Wald test differential expression analysis. Heatmaps represented regularized log-transformed gene expression normalized by Z-score. Pathway enrichment analysis (Gene Ontology GO) was performed using clusterProfiler (v 3.12.0)28 (link). Log-transformed p-values and the number of genes mapped to each annotation are depicted on the dot plot.
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2

Total RNA Isolation from Muscle Tissue

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To isolate total RNA, TA muscles were placed in 1 mL of RNAsol (Sigma Aldrich) and homogenized using a tissue homogenizer (OMNI International). RNA was extracted after 10 min precipitation in isopropanol and resuspended in RNAse free water and RNase inhibitor (1:20; New England BioLabs, #M0314L). RNA integrity was tested as previously described in Soliman et al.28 using the Agilent Bioanalyzer 2100. RNA libraries were prepared following the standard protocol for the TruSeq Stranded mRNA library kit (Illumina) on the Illumina Neoprep automated microfluidic library prep instrument. Paired end sequencing was performed on the Illumina NextSeq 500 using the High Output 150 cycle Kits.28
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