The largest database of trusted experimental protocols

847 protocols using axiocam mrm

1

Colocalization Analysis of Auxin Analogs and ER

Check if the same lab product or an alternative is used in the 5 most similar protocols
For the colocalization study, we used an AxioImager Z.1 microscope (Zeiss, Jena, Germany) equipped with an ApoTome microscope slider for optical sectioning and a cooled digital CCD camera (AxioCamMRm; Zeiss), recording GFP fluorescence from fluorescent auxin analogs through the filter set 38 HE (excitation at 470 nm, beamsplitter at 495 nm and emission at 525 nm). To resolve the cellular details of individual cells, and to score the co-localization of NBD-NAA and ER-Tracker, we used an AxioObserver Z.1 (Zeiss, Jena, Germany) inverted microscope equipped with a laser dual spinning disk scan head (Yokogawa CSU-X1 Spinning Disk Unit, Yokogawa Electric Corporation, Tokyo, Japan). A cooled digital CCD camera (AxioCamMRm; Zeiss) recorded the signals induced by the two laser lines (488 nm and 561 nm, Zeiss, Jena, Germany) attached to the spinning disk’s confocal scan head. We used a Plan-Apochromat 63×/1.44 DIC oil objective and operated image acquisition via the ZEN 2012 (Blue edition) software platform. Confocal z-stacks consisting of 10–30 individual sections were collected, and orthogonal projections were generated using the maximal intensity algorithm.
+ Open protocol
+ Expand
2

Measuring Vascular Permeability Using FITC-Albumin

Check if the same lab product or an alternative is used in the 5 most similar protocols
After selection of the post-capillary venule with diameter ranging between 20 μm and 35 μm, fluorescein isothiocyanate-conjugated (FITC) albumin (0.2 ml per 100 g body weight) was injected into the femoral vein. Observations were made using a Zeiss 20T fluorescence microscope. FITC-albumin was stimulated with an incident-light illumination system with a 460 to 490-nm blue light band excitation filter from a mercury arc lamp (Mercury Power Supply, model 1200; OptiQuip, New York, NY). The closed-circuit video recording system consisted of an AxioCam MRm camera (AxioCam MRm; Zeiss, Germany).
The injected FITC-albumin appears as a white column against a black background in the venule. Fluorescent dye leaks appear as white streaks outside the vessel lumen. The live images of permeability were captured by the computer, and then analysed with Image PRO-Plus software (version 2.1; Media Cybernetics, Silver Spring, MD). The venule lumen was first outlined, and was considered as the intravascular space (IVS). Next, lines were drawn outside the vessel lumen and along the vessel length on both sites, and were labelled and assessed as the interstitial spaces (ISS). The optical density of the average ISS was divided by the IVS density to calculate the permeability index (PI) (Figures 8 A, B).
+ Open protocol
+ Expand
3

Imaging Hippocampal Neurons and Microglia

Check if the same lab product or an alternative is used in the 5 most similar protocols
Hippocampal neuron morphology within the pyramidal shaped CA1 neurons were imaged (z-stack thickness of 0.5 μm) using an Axioplan 2 imaging microscope (Zeiss) equipped with a 63× (N.A. 1) oil objective accompanied with a digital camera (AxioCam MRm, Zeiss).
The microscopic images of anti–IBA-1 and Aβ (clone BAM-10) were taken within the area of cortex and hippocampus. IBA-1 cells were taken from the CA1 area of the hippocampus in three-dimensional (z-stack thickness, 1 µm) using Axioplan 2 imaging microscope (Zeiss) equipped with an ApoTome module (Zeiss) with a 20× objective (NA, 0.8) and a digital camera (AxioCam MRm; Zeiss). To analyze, a region of interest was drawn in ImageJ software (Wayne Rasband, NIH, Bethesda, MD).
+ Open protocol
+ Expand
4

Quantitative Analysis of Chick Brain Regions

Check if the same lab product or an alternative is used in the 5 most similar protocols
The immunofluorescent images were taken with a ZEISS inverted fluorescence microscope (AxioCam MRm, Zeiss) under a 20 × or 40 × objective lens that was equipped with a monochromatic digital camera (AxioCam MRm, Zeiss). AxioVision Rel. 4.8 acquisition and processing software was used to acquire uniform digital images for each antibody throughout the experiments, and the images were converted to TIFF files. ImageJ and Adobe Photoshop were used to analyze and manage the TIFF files.
As the present study was mainly concerned with whether brain changes appeared among the W, M, N and St, the brain levels (from A6.2-A10.2 in the chick brain atlas) containing the above regions were chosen. There were no significant differences among these brain levels, and the results reported were combined.
The obtained values (the numbers of labeled cells) were compared by using the SPSS 11.5 software package. One-way ANOVA was conducted to compare the differences among the studied groups. Before ANOVA, the distributions of dependent variables were tested for normality, and homogeneity of variance was assessed for equality of error variance (Levene’s test). The data are presented as the mean ± SEM. Differences between the groups of data were considered either nonsignificant (p > 0.05) or significant at various levels (*p < 0.05, **p < 0.01 and ***p < 0.001).
+ Open protocol
+ Expand
5

Evaluating PLGA-CDs Nanoparticle Uptake in MDA-MB-231 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell uptake of PLGA-CDs1% NPs and PLGA-CDs20% NPs (0.5 mg mL−1) was evaluated by fluorescence microscopy (Axio Cam MRm, Zeiss, Oberkochen, Germany) on MDA-MB-231 after 4, 6 and 24 h of incubation. Cells were seeded in an 8-well plate at a density of 1 × 104 cells per well (200 μL) and growth in DMEM. After 24 h the medium was replaced with equal volume of fresh medium containing the nanosystem (0.5 mg mL−1). After different incubation time, nuclei were stained with 4′,6-diamidino-2-phenylindole (DAPI) washing cells with DPBS pH 7.4, adding the DAPI solution (100 μL) and incubating cells for 10 min. Cells were then washed up with fresh DPBS (200 μL three times) and images were recorded by a fluorescence microscope using a Zeiss Axio Cam MRm (Zeiss AG, Oberkochen, Germany).
+ Open protocol
+ Expand
6

Fluorescence Microscopy Imaging Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Live cell images were acquired using a Zeiss AxioObserver D1 inverted fluorescence microscope with AxioCam MRm and a 10× objective. Filter excitation (EX) and emission (EM) bandpass specifications were as follows (in nm): GFP (EX: 470/40, EM: 525/50); mCherry (EX: 545/25, EM: 605/70). Immunostaining images were acquired using the previous Zeiss AxioObserver or the Zeiss AxioImager A1 upright fluorescence microscope with AxioCam MRm and 10x or 20x objectives. Filter excitation (EX) and emission (EM) bandpass specifications were as follows (in nm): DAPI (EX: 365, EM: 445/50); FITC (EX: 450/90, EM: 515/65). For phalloidin immunostaining, cells were seeded on sterile coverslips or in culture plates directly and treated with 1 μg/mL tetracycline for 24 h before fixation with 4% paraformaldehyde. After fixation, cells were permeabilized with 0.1% Triton X-100 and incubated with 0.1 μg/mL FITC-conjugated phalloidin (Sigma) for 1 h at room temperature. Next, cells were stained with 300 nM 4′,6-Diamidino-2-Phenylindole (DAPI) and mounted on glass slides with Vectashield Hardset mounting media (Vector) for fluorescence microscope imaging, when not imaged directly in wells.
+ Open protocol
+ Expand
7

Imaging Excretory and Somatic Gonad Cells in C. elegans

Check if the same lab product or an alternative is used in the 5 most similar protocols
arIs164[glt-3p::Venus]56 (link) was used as a marker for the excretory cell. 10–15 epn-1(0); enEx[epn-1::GFP] adults were picked onto a plate seeded with OP50 bacteria, allowed to lay eggs for 3 hours, and then removed. 24 hours later, progeny from epn-1(0); enEx[epn-1::GFP] were picked and imaged on the GFP channel at 50ms exposure time at a Zeiss Axio Imager D1 microscope with an AxioCam MRm at 40x. epn-1(0) progeny were identified by the lack of EPN-1::GFP, which is ubiquitously expressed throughout the animal.
To score lag-2(0) for comparison, lag-2(0) progeny from lag-2(0); arIs164; arEx2511[lag-2(+)] lacking the green pharyngeal marker included in the rescuing array were picked and imaged on the GFP channel at 700ms exposure time on a Zeiss Axio Imager D1 microscope with an AxioCam MRm at 40×. The same was done for the control progeny retaining arEx2511, except images were taken at 50ms exposure time to show presence of green pharynx, since arIs164 is very bright.
+ Open protocol
+ Expand
8

Fluorescent Microscopy Imaging Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
All slides were visualized using a microscope (Axio Imager.Z1; Carl Zeiss) under a 20×, 0.5 NA EC Plan Neofluar air immersion (Carl Zeiss) or 63×, 1.4 NA Plan Apochromat oil immersion differential interference contrast (Carl Zeiss) magnifying objective at room temperature. Images were captured on a charge-coupled device camera (AxioCam MRm; Carl Zeiss). The fluorochromes used were Alexa Fluor labeled with Cy3, Cy5, or FITC. Images were captured with a cooled charged-coupled device camera (AxioCam MRm) and processed using AxioVision software (version 4.7.2; Carl Zeiss).
+ Open protocol
+ Expand
9

Confocal Microscopy for Tubulin Network Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissues and cells were viewed with a Nikon C1 confocal microscope. S2 cell images were obtained using a Plan Apochromat 60×/1.45 NA oil immersion objective (Nikon). Salivary gland images were obtained using 20×/0.75 NA objective lens. Images were captured and analyzed with EZ-C1 Ver 3.00 software. Alternatively, tissues and cells were viewed using an Axioplan 2 microscope (Zeiss, NY, USA) with ApoTome (Zeiss) and imaged with a Zeiss AxioCam MRm. Images were captured and analyzed using AxioVision software. For S2 cell images and salivary gland images, a 64× lens and 20× lenses were used respectively. For quantification of tubulin network phenotypes, 10 salivary glands each from wild type and mutant were analyzed, with two images/gland captured using the ApoTome and Zeiss AxioCam MRm camera. Cells displaying normal, fragmented, sparse and dense tubulin networks were manually counted. For Z-stack series, images were captured using 40× lenses at 2 µm thickness.
+ Open protocol
+ Expand
10

Microscopic Analysis of Cell Capsule

Check if the same lab product or an alternative is used in the 5 most similar protocols
Differential interference microscopy (DIC) and fluorescent images were visualized with a Zeiss Axio Imager fluorescence microscope (64X objectives). Images were taken with an AxioCam MRm digital camera with ZEN Pro software (Zeiss). The same exposure time was used to image for every strain analyzed in one data set. Images were analyzed using ImageJ/Fiji software. For indicated strains a DAPI stain (NucBlue, Invitrogen) was used to visualize the nucleus. DAPI stained cells were analyzed using the DAPI stain, Cel1-GFP were visualized using the GFP channel. Cells sizes were measured using the ImageJ measurement tool. Capsule thickness was calculated using the equation:
capsulethickness=(celldiameterincludingcapsulecellbodydiameter)2
Histopathology images were taken with a color camera (AxioCam MRm) attached to the Zeiss Axio Imager and analyzed using ImageJ/Fiji.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!