The largest database of trusted experimental protocols

8 protocols using hecd 1

1

Immunohistochemical Characterization of Tumor Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tumor tissues in the PDX assays and MiniPDX assays were fixed in buffered 10% formalin and routinely stained with hematoxylin and eosin (H&E) and examined by a certified pathologist.
For immunofluorescence studies, cellularized tumor cells (2 × 104 cells, 200 L) were cytospun onto a slide, fixed with 4% paraformaldehyde for 20 min, permeabilized with 0.3% Triton X-100 in PBS for 30 min, and then blocked with 5% normal goat serum for 1 h at room temperature. The cells were then divided into three fractions and incubated with primary mouse monoclonal antibodies at 4 °C overnight against the following proteins: pan-cytokeratin, indicating carcinoma components [27 (link), 28 (link)] (1:200, AE1/AE3, sc-81714, Santa Cruz Biotechnology, Santa Cruz, CA, US), E-cadherin, generally found in gastric adenocarcinomas [29 (link)] (1:50, HECD-1, ab1416, Abcam, Cambridge, UK), and MG7, a marker of gastric cancer [30 (link)] (1:300, NOTA-MG7) [30 (link)]. Subsequently, the cells were probed with secondary antibody donkey anti-mouse IgG H&L (Alexa Fluor® 488) (1:200, ab150105, Abcam). Finally, the cells were mounted with DAPI-containing mounting medium (S36973, Thermo Fisher, MA, US). Images were captured with a fluorescence microscope (Leica, Germany) with Leica Application Suite V4 software and edited with Photoshop (Adobe, US).
+ Open protocol
+ Expand
2

Comprehensive Protein Expression Analysis in EMT

Check if the same lab product or an alternative is used in the 5 most similar protocols
Akt2 (5B5), p-AKT (S473; 736E11), p44/42 MAPK (Erk1/2; 137F5), p-p44/42 MAPK (T202/Y204, D13.14.4E), p-Smad2 (S465/467; 138D4), Smad4, SNAI2, ZEB1 (all Cell Signaling Technology); AGR2 (K-31, in-house); AGR2 (1C3, Abnova); vimentin (V9, Dako); E-cadherin (NCH38, Dako; HECD1, Abcam; Cell Signaling); N-cadherin (3B9, Invitrogen); β-actin (C4, Santa Cruz Biotech); Alexa Fluor 488 goat anti-mouse IgG, Alexa Fluor 532 goat anti-rabbit IgG (both Abcam); α-tubulin (AA13, Sigma); HRP-conjugated swine anti-rabbit and HRP-conjugated rabbit anti-mouse (both Dako).
+ Open protocol
+ Expand
3

Visualizing ECAD-EPN3 Colocalization

Check if the same lab product or an alternative is used in the 5 most similar protocols
Co-localization between ECAD and EPN3 (Fig. 5c) was performed using an anti-ECAD Ab (HECD-1) from Abcam, recognizing the extracellular domain of ECAD66 (link). Briefly, MCF10A-Ctr or -EPN3 cells were plated on coverslips at ~30% confluence. Cells were starved overnight in culture medium containing 5% horse serum in absence of EGF. After starvation, coverslips were washed with PBS and incubated with the anti-ECAD Ab (2 μg ml−1) for 1 h at 4 °C. The time zero sample was immediately fixed with 4% PFA. The other samples were incubated at 37 °C for 90 min with culture medium containing 5% horse serum and TGFβ (5 ng ml−1). After incubation cells were fixed with 4% PFA, followed by IF (as described in the Paragraph: “ECAD staining at the cell-to-cell junction”). Cells were stained with anti-EPN3 rabbit polyclonal Ab (50 ng ml−1). EPN3 and ECAD signals were then revealed with secondary Ab Cy3-conjugated (red, donkey anti-rabbit IgG 715-165-152, Jackson ImmunoResearch, dilution 1:400) or Alexa-488-conjugated (green, donkey anti-mouse IgG 715-165-150, Jackson ImmunoResearch, dilution 1:400), respectively. Images were obtained using a Leica TCS SP2 or TCS SP2 AOBS confocal microscope equipped with a 63× oil objective and processed using ImageJ software (v1.52, NIH).
+ Open protocol
+ Expand
4

Branching Morphogenesis Pathway Inhibition

Check if the same lab product or an alternative is used in the 5 most similar protocols
To analyze the influence of specific pathways and processes during branching morphogenesis different inhibitors were used. To inhibit actin polymerization organoids were treated with 1 µg/ml Cytochalasin D (Merck). organoids were analyzed 4 h after treatment. To inhibit collagen degradation 10 µM Marimastat (Merck) was added to the organoid culture. According experiments were started directly after treatment. Inhibition of Rho kinase was achieved by using 10 µM Y-27632 (Abcam). Blocking of E-cadherin was performed by addition of an E-chadherin blocking-antibody HECD1 (Abcam) in a dilution of 1:50. Specifically, HECD1 was added continuously from day 5 to day 14.
+ Open protocol
+ Expand
5

Inhibition of Matrix Degradation and Cell-Cell Adhesion

Check if the same lab product or an alternative is used in the 5 most similar protocols
Inhibitors were added at various developmental stages to the cell culture media. In particular, the media was enriched with the inhibitors directly prior to the experiment, which was then present throughout the whole measurement. Matrix degradation was inhibited by 10 μM Marimastat (Merck), and cell–cell adhesion was lowered by blocking E-Cadherin via HECD1 (Abcam) in a dilution of 1:25.
+ Open protocol
+ Expand
6

Immunofluorescence Staining of Collagen Gels

Check if the same lab product or an alternative is used in the 5 most similar protocols
Collagen gels were first washed with PBS solution, subsequently fixed with 4% paraformaldehyde for 15 min and finally rinsed twice with PBS solution again. The cell membranes were permeabilized with 0.2% Triton X-100 and blocked with 10% goat or donkey serum in 0.1% BSA. Regarding immunofluorescence stainings, the samples were incubated with primary and secondary antibodies diluted in 0.1% BSA. DAPI was used to visualize the cell nuclei, HECD1 (Abcam) was used to label E-cadherin and Phalloidin conjugated with Atto 647 (Sigma) was used to visualize the actin network. Alexa 488 (Life Technologies) was used as the secondary antibody for the E-Cadherin.
+ Open protocol
+ Expand
7

Organoid Perturbation Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Organoids were grown under normal conditions for 9 days; on culture day 10, medium containing either 0.5 nM calyculin A (Gibco), 10 μM Marimastat (Santa Cruz Biotechnology) or HECD-1 (abcam) at a ratio of 1:50 was added. Fresh drug was replenished in a second medium change on day 12. Organoids were imaged by bright-field Hoffman contrast microscopy. To determine the organoid size, we manually drew ellipses tightly enclosing the structures and defined the size as the mean of the elliptic axes.
+ Open protocol
+ Expand
8

Western Blot Analysis of Placental Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Proteins extracted from cultured BeWo cells were subjected to a Western blot analysis, as described previously [16] . In brief, proteintransferred membranes were incubated with the primary antibodies for p16 (1:1000 dilution), p21 (1:100 dilution), PML (1:1000 dilution), Ecadherin (mouse monoclonal antibody, HECD-1, 1:1000 dilution, Abcam), and β-actin (mouse monoclonal, AC-74, 1:5000, Sigma-Aldrich, St. Louis, MO) at 4 °C overnight. These membranes were then incubated with peroxidase-conjugated secondary antibodies at room temperature for 30 min. Bound antibodies were visualized using the ECL Western blot detection reagent (Amersham, Piscataway, NJ). Proteins extracted from the HPV-positive, p16-overexpressing cervical carcinoma CaSki cell line were used as the positive control for p16. HCG in the culture supernatant was measured by a chemiluminescent enzyme immunoassay in SRL, Inc. (Tokyo, Japan).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!