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Anti cd9

Manufactured by Santa Cruz Biotechnology
Sourced in United States

Anti-CD9 is a laboratory reagent used for the detection and analysis of the CD9 protein. CD9 is a cell surface glycoprotein that plays a role in cell-cell interactions, cell adhesion, and signal transduction. Anti-CD9 can be used in various immunological techniques, such as flow cytometry, immunoprecipitation, and Western blotting, to identify and quantify CD9-expressing cells or proteins.

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46 protocols using anti cd9

1

Exosome Characterization via Western Blotting

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In exosome characterization, uranyl acetate solution (TAAB, England) was used for exosome staining. For the western blotting, the protein lysis buffer (St. Louis, USA), bicinchoninic acid (BCA)-assay (Cat No: DB9684-50ml, DNAbiotech Co. Tehran, Iran), polyvinylidene fluoride (PVDF) membranes (Millipore, Billerica, Massachusetts, United States), antibodies from Santa Cruz Biotechnology including anti- CD9 (sc-13118, Dallas, USA), anti-CD81(sc-166029, Dallas, USA) and anti-CD63 (sc-5275, Dallas, USA), anti-Calnexin (sc-23954, Dallas, USA) and anti-Mouse IgG (Goat), HRP Conjugated (1: 10 000; Santa Cruz, sc-2005). For RNA isolation, TRIzol (RiboEx.LS, Seoul, South Korea), isopropyl alcohol, and ethanol from Merck, Germany. The miRCURY LNA RT Kit (Cat No./ID: 339340, Hilden, Germany), miRCURY LNA miRNA Focus PCR Panel (Cat. no. YAHS-102Y, Hilden, Germany), cel-miR-39 Spike-in (Norgen Biotek, Thorold, Canada), RevertAid Reverse Transcriptase (Thermo Scientific, Kaunas, Lithuania), SYBR Green master mix (RealQ Plus 2x Master Mix Green, Ampliqon, Denmark) and primers purchased from (Macrogen, Seoul, South Korea).
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2

Immunoblotting of Protein Complexes

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Immunoprecipitated protein was lysed in RIPA buffer (Beyotime, P0013B) and loaded into 12% SDS-PAGE gels to be transferred onto a PVDF membrane (Millipore, IPVH00010). The primary antibody at dilutions recommended by the suppliers was anti-ASGRP1 (Santa Cruz Biotechnology, sc-52623), anti-CD63 (Santa Cruz Biotechnology, sc-5275), anti-CD9 (Santa Cruz Biotechnology, sc-13118), anti-villin (Santa Cruz Biotechnology, sc-58897), anti-GFP (Cell Signaling Technology, 2956S), anti-mCherry (Abcam, ab167453), anti-β-actin (Cell Signaling Technology, 4,970).
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3

Exosome Immunoblotting Protocol

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Samples were mixed with Laemmli sample buffer with or without DTT (non-reducing conditions were applied for CD63 and CD81) and denatured for 5 min at 90 °C. Afterwards, 10 μg of exosomes were separated by electrophoresis on 10% SDS-polyacrylamide gel and transferred onto a nitrocellulose membrane (Thermo Fisher Scientific, cat. 88018). The membrane blocking was performed for 2 h in 5% skim milk and 0.1% Tween20 in PBS (for anti-CD9, anti-CD63, anti-TSG101) or 5% BSA and 0.1% Tween in PBS (for anti-CD81). Incubation with the primary antibodies, anti-CD63 (Invitrogen, Waltham, MA, USA, cat. 10628D, 1:1500), anti-CD9 (Santa Cruz Biotechnology, Dallas, TX, USA, cat. Sc-13118, 1:500), anti-CD81 (Biorbyt, Cambridge, U.K., cat. Orb388959, 1:500), anti-TSG101 (Becton Dickinson, Franklin Lakes, NJ, USA, cat. 612697, 1:800), was performed overnight at 4 °C. After washing, HRP-conjugated secondary antibody (IgG goat-anti-mouse, Dianova, Hamburg, Germany, cat. 115-035-003, 1:10,000) was added and incubated for 1 h at RT. According to the manufacturer’s instructions, the chemiluminescent signal was elicited by AceGlow™ Chemiluminescence Substrate (VWR Life Science, Radnor, PA, USA, cat. 730-1511).
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4

Exosomal Protein Analysis by Western Blot

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Lysates of cells or exosomes were diluted at a ratio of 1:5 with protein loading buffer (5×; Beyotime Biotechnology, Jiangsu, China) and heated at 95 °C for 5 min. Protein extracts were separated by SDS-PAGE (6% gel for DMBT1 and 12% gel for other proteins) and transferred to polyvinylidene fluoride membranes (Immobilon P, Millipore, USA). The membranes were blocked with 5% milk in TBST (Tris-buffered saline, 10 mM Tris-HCl pH 7.5, 150 mM NaCl, 0.1% Tween-20) for 60 min at room temperature, incubated with primary antibodies at 4 °C overnight and then incubated with the horseradish peroxidase-conjugated secondary antibodies at 37 °C for 1 h. Primary antibodies and dilutions were used as follows: anti-CD9 (1:500; Santa Cruz), anti-CD63 (1:300; Santa Cruz), anti-CD81 (1:500; Santa Cruz), TSG101 (1:1000; ProteinTech, Chicago, USA), anti-DMBT1 (1:5000; Abcam, Cambridge, Britain), anti-VEGF-A (1:500; R&D system, Minneapolis, USA), Akt (1:500; Cell Signaling Technology, Danvers, USA), anti-phosphorylate Akt (p-Akt; 1:500; Cell Signaling Technology) and anti-GAPDH (1:5000; Cell Signaling Technology). All the secondary antibodies (1:5000) were obtained from Cell Signaling Technology. The immunoreactive bands were visualized using enhanced chemiluminescence reagent (Thermo Fisher Scientific, Waltham, USA) and imaged by the ChemiDoc XRS Plus luminescent image analyser (Bio-Rad).
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5

Quantification and Characterization of Extracellular Vesicles

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The concentration of proteins in the analyzed samples was assessed using the Pierce BCA Protein Assay kit (Thermo Fisher Scientific, Waltham, USA; 23 225) according to the manufacturer’s instructions. Twenty microliters of SEC fractions (corresponding to ~5–6 μg of proteins) were mixed with loading buffer to a final concentration of 2% (v/v) SDS, 0.1% (v/v) bromophenol blue, 10% (v/v) glycerol, and optionally 100 mM DTT, denatured for 5 min at 95°C and separated by 12% SDS-polyacrylamide gel electrophoresis followed by wet transfer onto nitrocellulose membranes (Thermo Fisher Scientific, Waltham, USA; 88 018). Membranes were blocked for 1 h in 5% non-fatty milk and 0.1% Tween in PBS, and then primary antibody (anti-CD63: Invitrogen, 10 628D, 1:1500; anti-CD9: Santa Cruz Biotechnology, sc-13 118, 1:800; anti-CD81: Invitrogen, 10 630D, 1:500) was added for overnight incubation at 4°C. After triplicate washes, secondary antibody conjugated with HRP was added for 1 h at room temperature. Chemiluminescence detection of bands was performed with SuperSignal West Femto Maximum Sensitivity Substrate (Thermo Fisher Scientific, Waltham, USA; 34 095) diluted 1:10 with washing buffer. CD63 and CD81 were detected under non-reducing conditions.
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6

Comprehensive Immune Signaling Antibody Protocols

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Puromycin was purchased from Sigma‐Aldrich. GAPDH, β‐actin, GFP, OFP, SHP2, p‐LCK, LCK, p‐AKT (Thr308), AKT, p‐ZAP70, and ZAP70 antibodies for western blot were purchased from Abmart. FGL1 antibodies were purchased from Santa Cruz Biotechnology Inc. Antibodies, including human PD‐L1 and PD‐1 were purchased from Invitrogen. Human LAG‐3 and Na+K+ATPase antibodies were purchased from Cell Signaling Technology and Santa Cruz Biotechnology Inc. respectively. Marker antibodies for exosomes, including anti‐CD9, anti‐CD63, and anti‐ALIX, were purchased from Santa Cruz Biotechnology Inc, and anti‐CD81 from System Biosciences. Wheat Germ Agglutinin (WGA) Alexa Fluor 488 and 350 dyes were purchased from Thermo Scientific. Ficoll Paque Plus used for isolating peripheral blood mononuclear cells (PBMC) cells was purchased from GE Healthcare. Staining antibodies, including CD3, CD4, CD8, CD25, and Foxp3 for FACS analysis were purchased from Biolegend Inc.
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7

Characterization of Extracellular Vesicle Markers

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Antibodies utilized in this study include anti-CD9 (Santa Cruz Biotechnology Inc., Dallas, TX), anti-CD63 (Abcam, Cambridge, MA), anti-CD81 (GeneTex Inc., Irvine, CA), anti-AHNAK 1 (Thermo Scientific, Waltham, MA), anti-HABP2 (Abnova, Walnut, CA), anti-CD44 (IM7 clone) (BD Biosciences), anti-CD44v10 (Novus Biologicals), and anti-actin (Sigma). Hyaluronic acid (sodium salt from Streptococcus zooepidemicus), LPS, ATP, and ionomycin were purchased from Sigma. Reagents for SDS-PAGE electrophoresis were purchased from Bio-Rad (Richmond, CA) and Immobilon-P transfer membrane was purchased from Millipore (Millipore Corp., Bedford, MA).
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8

Extracellular Vesicle Protein Profiling

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Equivalent amounts of total protein from extracellular vesicles and cells were separated using SDS–PAGE and transferred to a polyvinylidene fluoride membrane (88520, Thermo Fisher Scientific, Waltham, MA, USA). The membrane was blocked with 5% non-fat milk in 1X TBS-T (0.05%) for 2 h at room temperature and subsequently incubated with primary antibodies anti-HSP90 α/β (1:3000, sc-13119, Santa Cruz Biotechnology, Dallas, TX, USA), anti-HSP70 (1:1000, sc-24, Santa Cruz Biotechnology), anti-CD9 (1:250, sc-13118, Santa Cruz Biotechnology), anti-Calnexin (1:400, sc-23954, Santa Cruz Biotechnology), anti-vitronectin (1:500, sc-74484, Santa Cruz Biotechnology), and anti-β-catenin (1:500, ab2365, Abcam, Cambridge, UK) overnight at 4 °C. The membranes were washed with TBS-T and incubated with a secondary antibody (1:5000, 115-035-003, Jackson ImmunoResearch Laboratories, West Grove, PA, USA, or 1:3000, 65-6120, Invitrogen, Waltham, MA, USA) for 2 h at room temperature. The membranes were washed with TBS-T three times and scanned on a C-DiGit Blot scanner (LI-COR Biosciences, Lincoln, NE, USA) using an Immobilon Crescendo Western HRP Substrate (WBLUR0100, Millipore, Burlington, MA, USA). Image Studio Digits v.5.2 software (LI-COR Biosciences, Nebraska, USA) was used for image acquisition.
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9

Western Blot Analysis of Extracellular Vesicle Markers

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Cells were harvested in lysis buffer containing Complete Protease Inhibitor Cocktail (Roche) and subjected to SDS-PAGE. Cellular proteins were transferred onto a nitrocellulose membrane (Millipore) and probed for anti-TERT (#ITA7204, Geno Technology, Inc.; dilution 1:1000), anti-Myc (LSBio [LifeSpan] Cat# LS-B2791-50, RRID:AB_1934317; dilution 1:1000), anti-CD9 (Santa Cruz Biotechnology Cat# sc-13118, RRID:AB_627213; dilution 1:2000), anti-CD63 (Santa Cruz Biotechnology Cat# sc-5275, RRID:AB_627877; dilution 1:2000), anti-CD81 (Santa Cruz Biotechnology Cat# sc-166029, RRID:AB_2275892; dilution 1:2000) or anti-GAPDH (#9484, Abcam; dilution 1:5000) antibodies. After washing, the membranes were incubated with secondary antibodies. The reaction was revealed using an ECL chemiluminescence kit (Amersham Biosciences) with Eastman Kodak Co. hyperfilm and quantified by Multi Gauge software (Fujifilm Life Sciences). Data are presented as the mean ± SD, based on at least three independent repeats.
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10

Characterization of Plasma Extracellular Vesicles

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The Western blotting was performed to characterize plasma EVs (Fig. 1B), as previously described [18 (link)]. The primary antibodies used were anti-CD9, CD63, CD81, and calnexin antibodies (Santa Cruz Biotechnology, USA). Membranes were washed, incubated with the corresponding HRP-conjugated secondary antibodies, and developed using the ECL system (ECL Plus; Thermo Fisher Scientific). Additional file 1: Figure S1 includes a representative whole membrane for the expression of each protein.
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