The largest database of trusted experimental protocols

50 protocols using sc 7392

1

Western Blot and Immunoprecipitation Antibodies

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following antibodies were used for western blot analysis: anti-MDC1 rabbit polyclonal antibody (R2, manufactured in our lab) [1 (link)], anti-KPNA2 mouse monoclonal antibody (sc-55538, Santa cruz, Dallas, TX, USA), anti-HA mouse monoclonal antibody (sc-7392, Santa Cruz), anti-GFP mouse monoclonal antibody (sc-5286, Santa Cruz), anti-Histone3 rabbit polyclonal antibody (ab1791, Abcam, Cambridge, UK), and anti-α-Tubulin mouse monoclonal antibody (sc-5286, Santa Cruz). For immunoprecipitation assay, anti-HA rabbit polyclonal antibody (F-7, Santa Cruz), anti-GFP mouse monoclonal antibody (sc-5286, Santa Cruz), anti-MDC1 rabbit polyclonal antibody (R2, manufactured in our lab), and anti-KPNA2 mouse monoclonal antibody (sc-55538, Santa cruz) were used. The following antibodies were used for immunofluorescence staining: anti-MDC1 rabbit polyclonal antibody (R2), anti-HA mouse monoclonal antibody (sc-7392, Santa Cruz), anti-RNF8 goat polyclonal antibody (ab15850, Abcam), anti-53BP1 rabbit polyclonal antibody (sc-22760, Santa Cruz), anti-BRCA1 mouse monoclonal antibody (sc-6954, Santa cruz), anti-γH2AX mouse monoclonal antibody (05-636-1, Millipore, Burlington, MA, USA), and anti-RNF168 rabbit polyclonal antibody (ABE367, Millipore).
+ Open protocol
+ Expand
2

Visualizing Protein Interactions in Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
HT-29 cells were plated on confocal dishes (100350, SPL). After treatment with the indicated chemicals, the cells were fixed with 4% paraformaldehyde for 10 min at room temperature. Cells were incubated with immunofluorescence blocking buffer (PBS with 3% BSA, 1% saponin, and 1% Triton X-100) containing anti-MYC (1:100; 5605, Cell Signaling) or anti-RIPK3 antibodies (1:50; 13526. Cell Signaling) overnight at 4 °C. Samples were washed with PBS three times and then incubated with Alexa Fluor 488 anti-rabbit (1:200; A-11008, Thermo Fisher Scientific) supplemented in immunofluorescence blocking buffer for 1 h. HeLa cells were cultured on confocal dishes (100350, SPL). Cells were transfected with HA-MYC- and RIPK3-GFP-expressing plasmids and then treated with the indicated chemicals. After treatments, the cells were fixed with 4% paraformaldehyde for 10 min at room temperature and then permeabilized via incubation with PBS containing 0.1% Triton-X 100. The samples were incubated with PBS containing 2.5% BSA and anti-HA antibody (1:100; sc-7392, Santa Cruz Biotechnology) for 2 h. The cells were washed with PBS three times and then incubated with Alexa Fluor 594 anti-mouse (1:200; A-11005, Thermo Fisher Scientific) for 1 h. DAPI was used to stain the nuclei. All stained samples were analyzed with a confocal microscope (LSM 800, Carl Zeiss).
+ Open protocol
+ Expand
3

Peptide-based Mapping of Cohesin and RSC Interactions

Check if the same lab product or an alternative is used in the 5 most similar protocols
20 amino acid long peptides covering the amino acid sequences of Scc2, Scc4 or Sth1, at 2 amino acids intervals, were synthesized on cellulose membranes using an Intavis Multipep peptide synthesizer (Intavis Bioanalytical Instruments AG). The membrane was activated in 50% methanol/10% acetic acid, then blocked with 2.5% dried milk in TBS (25 mM Tris/HCl pH 7.5, 150 mM NaCl, 0.1% Tween 20) at room temperature for 2 h. The blocked membrane was incubated with 1 μg/ml of either RSC or cohesin loader in 2.5% milk in TBS at 4 °C overnight. The membrane was washed with TBS and either bound RSC was detected using an anti-Pk epitope antibody (clone SV5-Pk1, Biorad MCA1360, used 1: 2000) or the cohesin loader was detected using an anti-HA epitope antibody (clone F7, Santa Cruz Biotechnology sc-7392, used 1: 5,000).
+ Open protocol
+ Expand
4

Zebrafish Embryo Immunofluorescence Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Zebrafish embryos at indicated stages were fixed by 4% paraformaldehyde at 4°C and washed by PBST (0.1% Triton X-100) for 3 times. Then the embryos were incubated in PBST (0.5% Triton X-100) for 1 hr at RT and washed by PBST (0.1% Triton X-100) for 3 times, followed by blocking in block buffer (10% normal goat serum, 2% BSA, 1% DMSO, 0.1% Triton X-100 in PBS) for 2 hrs. Thereafter, phalloidin and/or primary antibodies in block buffer were added overnight at 4°C, and then secondary antibodies were used for another 5 hrs at RT. The following primary antibodies and dilutions were used: mouse anti-NMII with 1:100 dilution (ab55456, Abcam), mouse anti-HA with 1:100 dilution (sc-7392, Santa Cruz), rabbit anti-GFP with 1:100 dilution (ab290, Abcam). Embryos were imaged by Zeiss LSM 710 confocal microscope.
+ Open protocol
+ Expand
5

Western Blot Antibody Validation Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antibodies used for western blot were: mouse anti-Flag (1:5,000, F3165, Sigma), mouse anti-Myc (1:1,000 sc-40, Santa Cruz), mouse anti-HA (1:1,000, sc-7392, Santa Cruz), mouse anti-GFP (1:500, sc-9996, Santa Cruz), mouse anti-α-tubulin (1:1,000, T5168, Sigma), rabbit anti-phospho-histone H3 (Ser 10) (1:5,000, 05-817 R, Millipore), rabbit anti-BubR1 (1:5000, A300-386A, BETHYL), mouse anti-Bub1 (1:1000, B0561, Sigma), rabbit anti-Bub3 (1:1000, ab131157, Abcam), rabbit anti-CENP-E (1:5,000, a gift from Dr. Don W. Cleveland), sheep anti-HOIP and anti-HOIL-1L (1:5,000, a gift from Dr. Philip Cohen), rabbit anti-SHARPIN (1:1,000, #4444, CST), anti-linear Ub62 (link) (1:2500, a gift from Dr. Vishva M. Dixit, Genentech Inc.), rabbit anti-Ub K48 (1:1000, 05-1307, Millipore), rabbit anti-Ub K63 (1:1000, 05-1308, Millipore), rabbit anti-Ska3 (1:3000, a gift from Dr. Hongtao Yu), rabbit anti-KNL1 (1:5000, a gift from Dr. Hongtao Yu). Western blot antibody against SHARPIN of primary MEF cells was: rabbit anti-SHARPIN (1:500, Millipore). Images have been cropped for presentation (uncropped scans of the blots were shown in Supplementary Fig. 7).
+ Open protocol
+ Expand
6

Antibody Detection in DNA Repair Pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
The antibodies used were: anti-HA (Santa Cruz, sc-7392, for HA-I-SceI, 1:1000 dilution), anti-RAD51 (H-92, Santa Cruz, sc-8349, 1:1000 dilution for immunoblotting, 1:200 dilution for immunofluorescence), anti-BRCA1 (EMD Millipore, OP107, 1:1000 dilution), anti-BRCA2 (EMD Millipore, OP95, 1:500 dilution), anti-RAD51AP1 (Abcam, ab88370, 1:1000 dilution), anti-HOP2 (Proteintech, 11339–1-AP, 1:2000 dilution), anti-ODC1 (Abcam, ab66067, 1:4000 dilution), anti-γ-H2AX (clone JBW301, Millipore, 05–636, 1:1000 dilution for immunoblotting, 1:400 dilution for immunofluorescence), anti-H2AX (GeneTex, GTX 108272, 1:2000 dilution), anti-α tubulin (GeneTex, GTX112141, 1:10,000 dilution), and anti-BrdU (abcam, ab6326, 1:200 dilution). Horseradish peroxidase conjugated secondary antibodies were: anti-rabbit (GeneTex, GTX213110–01, 1:5000 dilution), anti-mouse (GeneTex, GTX213111–01, 1:5000 dilution). The secondary antibodies used for immunofluorescence were: DyLight 488 conjugated anti-rabbit (ThermoFisher, 35553, 1:200 dilution), DyLight 488 conjugated anti-mouse (ThermoFisher, 35502, 1:200 dilution). For hair follicle section staining, the secondary antibodies were purchased from Jackson ImmunoResearch as follows: Alexa Fluor® 488 Donkey Anti-Rat IgG (H + L) (712–545–150) and CyTM3 Donkey Anti-Rabbit IgG (H + L) (711–165–152).
+ Open protocol
+ Expand
7

In vitro RUNX3 Interaction Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
In vitro translation was performed using TnT Quick Coupled Translation System (Promega, #L1170) according to the manufacture’s instruction. Briefly, pCS4-HA-RUNX3, pCS4-HA-G9a, pCS4-HA-G9a-ΔSET plasmids were translated with TnT rabbit reticulocyte lysate using a TnT SP6 RNA polymerase. In vitro translated proteins were electrophoresed in SDS-PAGE gel and western blot analysis was performed with anti-HA antibody (SC-7392, Santa Cruz) to confirm the protein synthesis. Proteins (400 µg) were immunoprecipitated with anti-RUNX3 antibody (ab40278, Abcam) and immunoblotted with anti-HA antibody to check their interaction.
+ Open protocol
+ Expand
8

Co-Immunoprecipitation of NF-YC9 and RGL2

Check if the same lab product or an alternative is used in the 5 most similar protocols
The 5 μM PAC-treated nf-yc9 rgl2 pNF-YC9:NF-YC9-3FLAG pRGL2:RGL2-6HA seeds were kept under light for 12 h. Total proteins were extracted with extraction buffer (50 mM Hepes, pH 7.5, 150 mM NaCl, 5 mM DTT, 1% Triton X-100), and were incubated with Protein G PLUS/Protein A-Agarose Suspension (IP10, CALBIOCHEN) plus either anti-FLAG antibody (F3165, Sigma) or preimmune serum (IgG) in the co-immunoprecipitation buffer (50 mM Hepes, pH 7.5, 150 mM KCl, 10 μM ZnSO4, 5 mM MgCl2, 1% Triton X-100) at 4 °C for 2 h. After being washed by co-immunoprecipitation buffer three times, the proteins bound to beads were resolved by SDS–PAGE and detected by anti-FLAG (F3165, Sigma) at a dilution of 1:10,000 or anti-HA antibody (sc-7392, Santa Cruz) at a dilution of 1:2,000. Uncropped scans of western blot results are shown in Supplementary Fig. 16.
+ Open protocol
+ Expand
9

Comprehensive Antibody and Inhibitor Panel

Check if the same lab product or an alternative is used in the 5 most similar protocols
Primary antibodies used in this study are as follows: UTX (33510S, Cell Signaling Technology; GTX121246, GeneTex), COP1 (A300-894A, Bethyl), CUL1 (SC-17775, Santa Cruz Biotechnology), CUL2 (A5308, Abclonal), CUL3 (2759, Cell Signaling Technology), CUL4A (AB60215a, Abgent), CUL4B (A6198, Abclonal), CUL5 (SC-373822, Santa Cruz Biotechnology), EMP1 (ab230445 and ab202975, Abcam), AUTS2 (25,001–1-AP, Proteintech), Ki67 (ab15580, Abcam), EZH2 (ab191080, Abcam), VEGFC (A2556, Abclonal), Caspase-9 (A0281, Abclonal), Bcl2 (15,071, Cell Signaling Technology), DDB2 (ab181136, Abcam), DCAF7 (ab138490, Abcam), DCAF13 (ab195121, Abcam), H3K27me3 (ab192985, Abcam; A2363, Abclonal), H3 (ab1791, Abcam), P27 (610,241, BD), HA-Tag (51,064–2-AP, Proteintech; SC-7392, Santa Cruz Biotechnology), Flag-Tag (F7425-0.2MG, Sigma; F3165-1MG, Sigma), GFP (66,002–1-Ig, Proteintech), Myc-Tag (16,286–1-AP, Proteintech), α-tubulin (SC-23948, Santa Cruz Biotechnology), and Vinculin (V4505, Sigma). The chemical inhibitors MG132 (S2619), MG101 (S7386), MLN4924 (S7109), Baf-A1 (S1413), and GSK126 (S7061) were purchased from Selleck.
+ Open protocol
+ Expand
10

Immunoprecipitation and Western Blot Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Methods for immunoprecipitation and western blot sample preparation were same as previously described [22 (link)]. Anti-FLAG M2 agarose beads (cat: A2220) were purchased from Sigma. The antibody against Fsp27 was used as described previously [22 (link)]. Antibodies against Actin (A5441, Sigma), FLAG (mouse source, F1804, sigma), MYC (sc-40, Santa Cruz), LRRK2 (5559, Cell signaling), Rab8a (6975, Cell signaling) and HA (sc-7392, Santa Cruz) were used for western blot analysis. The blots were detected using HRP-conjugated secondary antibodies (GE Healthcare, UK) and the ECL-Plus system.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!