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19 protocols using 7 dehydrocholesterol

1

Virus Entry Assay Protocol

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HOS cells expressing CD4/CCR5 were acquired from the NIH AIDS Reagent Program from Dr. Nathaniel Landau. DNA sequences encoding BaL.01 Env and NL4-3 R E Luc+ core were also obtained from the NIH AIDS Reagent Program from Dr. John Mascola and Dr. Nathaniel Landau, respectively. The plasmid encoding JR-FL gp160 was a kind gift of Dr. Simon Cocklin, while the plasmid encoding YU2 gp160 was a kind gift of Drs. Alon Herschorn and Joseph Sodroski. Methyl β-cyclodextrin (MβCD), cholesterol, cholestanol (5α-cholestan-3β-ol), 7-dehydrocholesterol (3β-hydroxy-5,7-cholestadiene), coprostan-3-ol (5β-cholestan-3β-ol), cholestenone (3-oxo-4-cholestene), 5α-cholestane, dehydroergosterol (Ergosta-5,7,9(11),22-tetraen-3β-ol) and Triton X-100 were purchased from Sigma–Aldrich. Laurdan dye was purchased from Invitrogen. Rabbit and mouse anti-p24 and CD45 antibodies were purchased from Abcam. D7324 anti-gp120 antibody was purchased from Aalto.
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2

Purification and Characterization of Sulfotransferases

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7-dehydrocholesterol (7-DH), 24-dehydrocholesterol (24-DH), dithiothreitol (DTT), ethylene-diamine-tetraacetic acid (EDTA), L-glutathione (reduced), 1-hydroxypyrene (1-HP), imidazole, isopropyl-thio-β-D-galacto-pyranoside (IPTG), lysozyme, 3-maleimido-PROXYL, N-cyclohexylmaleimide, pepstatin A, potassium phosphate, 2,2,2-trichloroethanol (TCE), and quercetin were the highest grades available from Sigma. Ampicillin, dimethyl sulfoxide (DMSO), KOH, LB media, MgCl2, tris(hydroxymethyl)aminomethane (Tris) base, and phenylmethylsulfonyl fluoride (PMSF) were purchased from Fisher Scientific. Glutathione- and nickel-chelating resins and Superdex 200 Increase, 10/300 GL columns were obtained from GE Healthcare. D2O was purchased from Cambridge Isotope Laboratories. Competent E. coli (BL21(DE3)) was purchased from Novagen. SULT2B1a and SULT2B1b clones were obtained from IDT. The SULT2A1 clone and SULT2B1b pKK233 (32 (link)) vector were obtained from Dr. C. N. Falany. Synthesis and purification of PAPS and PAP is previously described (33 (link), 34 (link)) and anion-exchange HPLC analysis suggested they are ~99% pure.
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3

Enzymatic Synthesis of Vitamin D Metabolites

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Glucose 6-phosphate and glucose-6-phosphate dehydrogenase (from Leuconostoc mesenteroides), NADPH, ergosterol, vitamin D3 and 7-dehydrocholesterol (7DHC) were from Sigma-Aldrich (Sydney, Australia). 25(OH)D3 was from Carbosynth Ltd (Compton, UK); lumisterol (L3) and 8-dehydrocholesteol (8DHC) was from Toronto Research Chemicals (Toronto, Canada), and 7-dehydodesmosterol (7DHD) was from Kerafast Inc (Boston, MA). 20S(OH)D3 was produced enzymatically from the action of bovine CYP11A1 on vitamin D3 as described before [29 (link)]. 27(OH)7DHC and 25(OH)7DHC were produced enzymatically from the action of human CYP27A1 on 7DHC [19 (link)] while 7-dehydropregnenolone (7DHP) was produced by the action of human CYP11A1 on 7DHC [21 (link),22 ]. 20S(OH)L3, 22(OH)L3, 24(OH)L3 and 20,22(OH)2L3 were produced from the metabolism of lumisterol by bovine CYP11A1 [34 (link)] while 25(OH)L3, (25R)-27(OH)L3 and (25S)-27 (OH)L3 were produced from the action of human CYP27A1 on lumisterol [33 (link)]. 20S(OH)-7DHC was produced chemically [35 (link)]. ergosterol and 7DHD were purified prior to use by HPLC using a C18 Alltima column (250 × 4.6 mm, 5 μm) (Grace, Hichrom, Berkshire, UK) with a 15 min 64–100 % methanol gradient followed by 55 min with 100 % methanol, at a flow rate of 0.5 mL/min.
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4

Synthesis of Cholesterol Derivatives

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The initiator, MeOAMVN,
was purchased from Wako Chemicals, dried under vacuum, and then stored
at −40 °C. 7-Dehydrocholesterol (>98%), tert-butyldimethylsilyl chloride, borane·THF (1.0 M in THF), and
methanesulfonyl chloride were purchased from Sigma-Aldrich Co. and
were used without further purification. Methyl linoleate (Nu-Chek-Prep,
Inc.) was purified on silica gel prior to use (10% ethyl acetate in
hexane) and was stored under argon. Benzene (HPLC grade) was passed
through a column of neutral alumina and stored over molecular sieves.
HPLC grade hexanes and 2-propanol were purchased from Thermo Fisher
Scientific Inc. 8-DHC, 5,8(14)-dienol, and 6,8(14)-dienol were synthesized
following previously reported procedures.17 −19 The synthesis
of 6,8(9)-dienol was described in the Supporting
Information
, and the NMR spectra matched those reported in
the literature, in which the compound was synthesized by a different
method.18 (link)
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5

Maintaining D. pachea Flies with 7-Dehydrocholesterol

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Drosophila pachea flies were retrieved from the San Diego Drosophila stock center (15090–1698.02) and maintained for about 40 generations at 25 °C in vials with 10 ml of standard Drosophila medium, mixed with 200 μg of 7-dehydrocholesterol (Sigma) dissolved in 40 μl of ethanol [67 (link), 68 (link)]. In this stock, about 20 % of the males possess short and bilaterally symmetric epandrial lobes (symmetric males) [43 ]. All flies came from the 15090.1698.02 stock except a few symmetric mutant males which came from a selection line that was derived from the 15090.1698.02 stock by selecting symmetric males for several generations in order to increase the proportion of symmetric males.
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6

Sterol Analytical Workflow Development

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Water (HPLC grade), methanol
(MeOH, HPLC grade), acetonitrole (ACN, HPLC grade), isopropanol (IPA,
HPLC grade), stigmasterol, ergosterol, and 7-dehydrocholesterol were
purchased from Sigma-Aldrich (MO, USA). Hydroxylamine-O-sulfonic acid (HOSA) was purchased from Combi-Blocks (CA, USA).
Hexafluoro-2-propanol (HFIP), cholesterol, and β-sitosterol
were purchased from Fisher Scientific (NH, USA). Pyridine was purchased
from Millipore Sigma (MA, USA). Bis[rhodium(α,α,α′,α′-tetramethyl-1,3-benzenedipropionic
acid)] (Rh2(esp)2) was from AmBeed (IL, USA).
All solvents and chemicals were used without further purification.
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7

Cultivation and Bioconversion of B. megaterium

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Either LB- (25 g/L, Becton–Dickinson) or TB- (24 g/L yeast extract, 12 g/L tryptone, 0.4% glycerol, 100 mM potassium phosphate buffer, pH 7.4) media were used for the cultivation of B. megaterium. For the preculture, 50 mL of medium either containing 10 µg/mL tetracycline (cells harboring a variant of pSMF2.1) or 10 µg/mL chloramphenicol (cells harboring a variant of pSMF3) were inoculated with cells from an agar plate or glycerol stock. For the main culture, 50 mL of medium containing 10 µg/mL of the required antibiotic were inoculated with 500 µL of the preculture. The main culture was grown until an optical density of ~0.4 was reached, protein expression was induced by addition of 0.25 g xylose dissolved in 1 mL distilled water. For whole-cell conversion experiments, substrates were dissolved in a 45% 2-hydroxypropyl-β-cyclodextrin/4% Quillaja saponin-solution. 2.5 mL of the solution were added to the culture directly after protein induction. A final substrate concentration of 300 µM was used for all conversion experiments. Cholesterol from sheep wool (purity ≥99%), 7-dehydrocholesterol (≥98%), β-sitosterol from plant extracts (purity ≥70%, containing residual campesterol), 2-hydroxypropyl-β-cyclodextrin (average molecular weight ~1,460) and Quillaja saponin (Sapogenin content ≥10%) were purchased from Sigma-Aldrich.
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8

Sterols Regulate Drosophila Development

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For the rescue experiments, 20 mg of dry yeast was mixed with 38 μl H2O and 2 μl ethanol or supplemented with 2 μl of the following sterols dissolved in ethanol: cholesterol (Wako; 150 mg/ml), 7-dehydrocholesterol (Sigma; 150 mg/ml), 5β-ketodiol (kindly gifted from Yoshinori Fujimoto, Tokyo Institute of Technology; 150 mg/ml) and 20-hydroxyecdysone (Sigma; 50 mg/ml). We crossed ouib29/TM3 Ser1GMR2 Act-GFP flies with ouib74/TM3 Ser1GMR2 Act-GFP flies. Eggs were laid on grape plates with yeast pastes at 25°C for 12 hours. At 36 hours AEL, 50 hatched GFP negative (ouib29/ouib74) first instar larvae were transferred to the yeast paste on grape plates and kept at 25°C. Every 24 hours, developmental stages were scored by tracheal morphology as previously described [22 (link)].
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9

Characterization of Sterol Standards

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β-sitosterol (>98% purity), campesterol (>65% purity), desmosterol (>85% purity), ergosterol (>95% purity), cholesterol (>99% purity), 7-dehydrocholesterol (>99% purity), ecdysone (>90% purity), and 20-hydroxyecdysone (>93% purity) were purchased from Sigma-Aldrich (St. Louis, MO, USA). cholesterol-3,4-13C2 (>99% purity) was purchased from C/D/N Isotopes, Inc (Pointe-Claire, Quebec, Canada). Stigmasterol (>99% purity) was purchased from Tama Biochemical Co (Tokyo, Japan).
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10

Sterol Profiling by GC-MS

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Cholesterol, stigmasterol, β-sitosterol, 7-dehydrocholesterol, lathosterol (5α-cholest-7-en-3β-ol), squalene, campesterol, brassicasterol, desmosterol, lanosterol, fucosterol, cycloartenol, and 5α-cholestane (internal standard) were acquired from Sigma-Aldrich (Saint-Quentin-Fallavier, France), cycloartanol and cycloeucalenol from Chemfaces (Wuhan, China), and zymosterol from Avanti Polar Lipids (Alabaster, United States). The C7-C40 Saturated Alkanes Standards were acquired from Supelco (Bellefonte, United States). Reagents used for extraction, saponification, and derivation steps were n-hexane, ethyl acetate, acetonitrile, methanol (Carlo ERBA Reagents, Val de Reuil, France), (trimethylsilyl)diazomethane, toluene (Sigma-Aldrich) and N,O-bis(trimethylsilyl)trifluoroacetamide with trimethylcholorosilane [BSTFA:TMCS (99:1); Supelco].
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