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5 protocols using poly d lysine

1

Epilepsy-Associated Nedd4-2 Mutant Characterization

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Dimethyl sulfoxide (DMSO) was from Fisher Scientific. AMPA was from Cayman Chemical and NBQX was from Alomone Labs. Recombinant GluA1 and 14-3-3ε were from Origene. Recombinant Nedd4-2 was from Abnova. R18 was from Sigma-Aldrich. Cycloheximide, poly-D-lysine and Protein A/G beads were from Santa Cruz Biotechnology. The antibodies used in this study were purchased from Santa Cruz Biotechnology (anti-α-Tubulin), Cell Signaling (anti-Nedd4-2, anti-pan-14-3-3, anti-N-cadherin and anti-Ubiquitin), Millipore (anti-GluA1), Abcam (anti-MAP2), Thermo Scientific (anti-HA) and GenScript Corporation (anti-Gapdh). The epilepsy-associated mutations were generated using site-directed mutagenesis reagent (Agilent) to introduce mutations into pCI-HA-Nedd4-2 [15 (link)]. The primers used are as below.
S233L: 5’-GGACGTGTCCTCGGAGTTGGACAATAACATCAGAC-3’,
5’-GTCTGATGTTATTGTCCAACTCCGAGGACACGTCC-3’;
E271A: 5’- GGGCGGGGATGTCCCCGCGCCTTGGGAGACCATTTC-3’,
5’- GAAATGGTCTCCCAAGGCGCGGGGACATCCCCGCCC-3’;
H515P: 5’- CGTTTGAAATTTCCAGTACCTATGCGGTCAAAGACATC-3’,
5’- GATGTCTTTGACCGCATAGGTACTGGAAATTTCAAACG-3’.
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2

Immunofluorescence Analysis of HO-1 and Nrf2

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Immunofluorescence assay was performed, as described previously[9 (link),12 (link),19 ]. Briefly, cells were cultured (5 × 104 cells in 0.2 mL of RPMI 1640/well) in microslides coated with poly-D-lysine (Santa Cruz). After stimulation with BFT for the indicated period, cells were treated with goat anti-HO-1 and rabbit anti-phospho-Nrf2 Abs as primary Abs for 2 h. Cells were then treated with Alexa fluor 488-conjugated secondary Ab (green color) against goat IgG and DyLight 549-conjugated secondary Ab (red color) against rabbit IgG for 1 h. Images were captured using a fluorescence microscope (DMI4000B, Leica Microsystems GmbH, Wetzlar, Germany)[9 (link),12 (link),19 ].
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3

Culturing Hippocampal Neurons from APP/PS1 Mice

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Primary hippocampal neuron cultures were obtained from APP/PS1 mice brains on embryonic day 17. After dissection, the hippocampus was dissociated from the brain and digested with 0.25% trypsin (Gibco, Waltham, MA USA, #25200056). Digestion was stopped by adding DMEM-F12 medium (Gibco, #12400-024) with 10% fetal bovine serum (FBS) (Cytiva, Marlborough, MA, USA, #SH30088.03), after which the tissue was dispersed. The cells were resuspended in DMEM-F12 medium with 10% FBS and plated in poly-D-lysine (Santa Cruz Biotechnology, Dallas, TX, USA, #sc-136156) coated culture dishes at a density of 4–5 × 105 cells/well. After 3 hours, the medium was replaced with serum-free Neurobasal medium (Gibco, #21103049) supplemented with B27 supplement (Gibco, #17504044), GlutaMAXTM (Gibco, #35050061), and 100× penicillin-streptomycin (P/S) (Gibco, #15140-122). Half of the medium was replaced every 2 days with fresh medium for 14 days allowing differentiation.
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4

Isolation and Culture of Chick DRG

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Fertilized chicken eggs were incubated at 37 °C and 80% humidity for 8 days. DRG were isolated from the trunk region of an 8-day old chick embryo based on protocols described elsewhere [35 (link),36 ]. In the case of DRG single-cell culture, DRG were dissociated enzymatically by incubation in 0.25% trypsin/0.05% EDTA solution for 20 min and trituration through a small-bore pipette (20–200 µL) [36 ]. DRG explants or cells were cultured in N2 medium [98% DMEM/F-12 medium, 0.5 mg/mL bovine serum albumin (BSA), 2 mM l-glutamine, 1 × N-2 supplement, 100 ng/mL nerve growth factor (NGF)] [36 ]. DRG explants or cells were seeded on coated glass coverslips. The coverslips were coated first with poly-D-lysine (0.1 mg/mL) (Santa Cruz Biotechnology Inc., Heidelberg, Germany) for 1 h at room temperature, and after washing with sterile water, they were coated with laminin from Engelbreth-Holm-Swarm murine sarcoma basement membrane (EHS laminin, laminin-1) (Merck, Darmstadt, Germany) for 4 h in 37 °C. Laminin was used in the concentration of 1 µg/cm2 in Hanks’ Balanced Salt solution (HBSS). DRG were cultured at 37 °C in 5% CO2 for 48 h. Next, they were subjected to lysates collection or fixation for immunostaining.
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5

Evaluating p53 Ubiquitination Pathways

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Picrotoxin and poly-D-lysine were from Santa Cruz Biotechnology. Pifithrin-α was from Adipogen Corporation. Nutlin-3 was from Cayman Chemical. Dimethyl sulfoxide (DMSO) was from Fisher Scientific. The antibodies used in this study were purchased from Santa Cruz Biotechnology (andi-p53 and IgG controls), GenScript Corporation (anti-Gapdh), and Cell Signaling (anti-Ubiquitin and anti-p53). HRP-conjugated secondary antibodies were from Santa Cruz Biotechnology and Sigma.
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