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8 protocols using mercaptoundecanoic acid

1

Synthesis and Characterization of Metal Nanoparticles

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Silver nitrate (AgNO3), sodium borohydride (NaBH4), mercaptoundecanoic acid (11MUA), NiCl2, CoCl2, ZnCl2, CuCl2, MnCl2, CdCl2, FeCl2, HgCl2, PbCl2, and CrCl3 were purchased from Sigma-Aldrich (St. Louis, MO, USA), and used without further purification. All the glassware was washed with boiling aqua regia before being used. All the solutions were prepared using ultrapure water (18.2 µS/cm).
Plots, fittings, and statistical analysis were performed by using MatLab R2020b (The MathWorks, Inc, Natick, MA, USA).
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2

Nanoparticle Molecular Imprinted Polymers

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Peptide sequences employed in nanoMIP development
(Ontores Biotechnology, Zhejiang, China), monomers for nanoMIP synthesis
(Sigma, Gillingham, UK), sodium hydroxide (Sigma), ammonium persulfate
(Sigma), mercaptoundecanoic acid (Sigma), ethanolamine hydrochloride
(Sigma), bovine serum albumin (BSA, Sigma), Pluronic solution (Sigma),
4-ABA (Fisher Scientific, Loughborough, UK), EDC (Fisher Scientific),
NHS (Fisher Scientific), ferricyanide (Sigma), ferrocyanide (Sigma),
potassium chloride (KCl, Sigma), hydrogen peroxide (30%, Sigma), ammonia
solution (25%, VWR International, Leicestershire, UK), PBS tablets
(Sigma), the alpha variant of the SARS-CoV-2 spike protein (The Native
Antigen Company, Kidlington, UK), the delta variant of the spike protein
(Abbexa, Cambridge, UK), HSA (Sigma), and IL-6 (Bio-Rad, Watford,
UK) were used as received. The SARS-CoV-2 RBD and ORF8 were provided
by the Medical Research Council Protein Phosphorylation and Ubiquitylation
Unit (Dundee, UK). PBS solutions were prepared with deionized (DI)
water, and AFM experiments were performed using Milli-Q water (both
with a resistivity of ≥18.2 MΩ cm).
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3

Synthesis and Characterization of Gold Nanoparticles from Mexican Shade-Grown Coffee

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Gold standard 0.1% m/m HyCel brand. Green coffee beans from C. arabica, Bourbon family, Mundo novo variety, shade grown were obtained from Xicotepec, location: 20°18′49.35″N, 98°0′48.57″W, altitude: 800–1050 m, mean temperature: 18.6°C, mean rainfall: 3181.5 mm, Puebla, Mexico (Ortega-Rivera et al., 2019 (link)). Deionised water was obtained from double-distilled water and treated with a Barnstead E-pure three-module deioniser. Nitrocellulose membranes (0.45 μm) were obtained from Millipore. Mercaptoundecanoic acid (C11H22O2S, ≥98%), dimethyl sulfoxide (CH3SOCH3 ≥ 99.9%), absolute ethanol, sodium hydroxide (NaOH, ≥99.5%), sodium mercapto propane sulfonate (C3H7O3S2Na, ≥90%), and MTT [3-(4,5-dimethylthiazol-2-yl) 2,5-diphenyltetrazolium bromide] were purchased from Sigma-Aldrich (Mexico). Dulbecco’s modified Eagle medium, foetal bovine serum, and streptomycin were purchased from Gibco (Life Technologies). Doxorubicin hydrochloride (C27H29NO11·HCl) was obtained from Doxolem® United Kingdom.
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4

Functionalization of Self-Assembled Monolayers

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4-aminothiophenol (4-ATP or pATP), cysteamine (CYS), cystamine, L-cysteine, mercaptopropionic acid (MPA), mercaptoundecanoic acid (MUA), 4-mercaptobenzoic acid (4-MB), hexanethiol (HT), imidazole, 2,6-dimethoxyphenol (DMP), NHS (N-hydroxysuccinimide), EDC (1-(3-dimethylaminopropyl)-3-ethylcarbodiimide hydrochloride), Na2HPO4, NaH2PO4H2O, and sodium chloride (NaCl) were obtained from Sigma-Aldrich. Sodium fluoride (NaF) and sodium azide (NaN3) were obtained from Merck-Suprapur. All chemicals were used as received without further purification.
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5

Functionalized Nanoparticle Synthesis Protocol

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Sodium citrate, hydrogen tetrachloroaurate trihydrate, sulfuric acid, ubiquinone-1, 1-mercaptohexanol (MCH), 1-hexanethiol (HT), mercaptohexanoic acid (MHA), mercaptoundecanoic acid (MUA), 3,3′-dithiodipropionic acid di(N-hydroxysuccinimide ester) (DTSP), dimethyl sulfoxide (DMSO), Nα′,Nα″-bis(carboxymethyl)-l-lysine, and nickel sulfate were purchased from Sigma (St-Louis, MO, USA); potassium phosphate dibasic trihydrate from Acros Organics (Geel, Belgium); mercaptopropionic acid and cysteamine (cyst) from Tokyo Chemical Industry (Tokyo, Japan). The 1,2-dioleoyl-sn-glycero-3-phospho-rac-(1-glycerol) (sodium salt) (PG) and 1,2-dimyristoyl-sn-glycero-3-phosphoethanolamine (PE) were provided by Avanti Polar Lipids Inc. (Alabaster, AL, USA). These chemicals were used without any additional purification. Thiols were dissolved in ethanol, and lipids were prepared in a 1/3 (v/v) mixture of ethanol and chloroform.
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6

Synthesis and Functionalization of Gold Nanoparticles

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Gold(III) chloride hydrate (HAuCl4∙xH2O), cetyl trimethylammonium bromide (CTAB), sodium borohydride (NaBH4), silver nitrate (AgNO3), ascorbic acid, FeCl3·6H2O, sodium citrate dihydrate, polyacrylamide, tetraethoxysilane (TEOS), (3-aminopropyl)triethoxysilane (APTES), mercaptoundecanoic acid (MUA), (3-mercaptopropyl)trimethoxysilane (MPTMS), N-hydroxysuccinimide (NHS), and N-ethyl-N’-(3-(dimethylamino)propyl)carbodiimide hydrochloride (EDC), were purchased from Sigma Aldrich, (Paris, France). Millipore water and reagent grade ethanol (EtOH) were used.
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7

Electrochemical Analysis of Horse Heart Cytochrome c

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Horse heart cyt c, 2,3-dimethoxy-5-methyl-p-benzoquinone (Q0), mercaptoundecanoic acid,
and mercaptoundecanol were purchased from Sigma-Aldrich. Milli-Q water
(Millipore, MA) was used in all preparations and procedures. Planar
disc 2 mm Ag electrodes were purchased from CH Instruments, Austin,
TX. Reference electrodes, counter electrodes, and potentiostats were
purchased from Metrohm Autolab BV, Utrecht, Netherlands. A high-power
multiarray LED (870-66-60) centered at 870 nm was purchased from Roither-Lasertechnik
GmbH, Wien, Austria.
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8

Synthesis and Characterization of Gold Nanoparticles

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Tetrachloroauric acid (HAuCl4.3H2O; ≥99.9% trace metals basis), sodium citrate monobasic (Na3C6H5O7; purum p.a., anhydrous, ≥99.0%), mercaptoundecanoic acid (MUA; 95%), N-(3-dimethylaminopropyl)-N′-ethylcarbodiimide hydrochloride (EDC; purum, ≥98.0%) and N—hydroxisuccinimide (NHS; 98%) were purchased from Sigma-Aldrich. 2-(N-morpholino) ethanesulfonic acid (MES; 99%) was supplied by Vetec. All the samples were prepared by using deionized water (Direct Q 3 UV-MilliQ, Merck Millipore; Darmstadt, Germany). The peptides C7H2 (YISCYNGATSYNQKFK) and HuAL1 (RASQSVSSYLA) were supplied by Peptide 2.0 (≥95% of purity). RPMI (Gibco) and DMEM (Gibco) medium were prepared in deionized water. Fetal bovine serum (FBS), streptomycin, and ampicillin were used to supplement the medium and were supplied by Cultilab and ThermoFisher Scientific, respectively. For cell viability assay, it was used trypan blue (solution 0.4%) and trypsin, both purchased from Sigma Aldrich. The antimicrobial studies were carried out in agar Muller-Hinton (Kasvi) and agar Sabouraud (Kasvi). Brain Heart Infusion (BHI, KASVI) was used to prepare pre-inocula of the strains. The in vivo experiments were carried out according to the Animal Use Ethics Committee (CEUA) of the Federal University of São Paulo (ethical approval code: 2210300817; 8-11-2017).
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