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16 protocols using culture media

1

Modulation of Endocytic Pathways in Flow Cytometry

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Immediately preceding insulin stimulation in flow cytometry preparations, cells were pre-treated with monodansylcadaverine (MDC) (20 μM, DMSO, Sigma), methyl-β-cyclodextrin (MβCD) (10 mM, culture media, Sigma), or relevant vehicle controls for 30 min at 37 °C [45 (link),46 (link),47 (link)]. MDC inhibits clathrin-mediated endocytosis by stabilizing clathrin-coated vesicles. MβCD disrupts caveolae by stripping cholesterol from the membrane and disrupting lipid rafts [48 (link)]. DMSO concentration was maintained at <0.5% in both experimental and vehicle treated samples.
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2

Preparing Cell Culture Media

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Culture media, D-glucose, fatty acids, and other basic reagents were obtained from Sigma-Aldrich (St. Louis, MO, USA).
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3

Cell Culture Methodology for Hepatocellular and Ovary Cells

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Cell lines were derived from the American Type Cell Culture collection, ATCC (LGC Standards-ATCC, Teddington, Great Britain). ATCC designations were as follows: HEP G2, hepatocellular carcinoma cells (HB-8065); CHO-K1, ovary cells (CCL-61). HEP G2 cells were maintained at 37 °C as a monolayer culture in Eagle’s Minimum Essential Medium, EMEM (ATCC). CHO-K1 cells were grown in F-12K medium (ATCC). FBS (10% v/v) (Eurx, Gdansk, Poland) was used for media supplementation. In total, 50 µg/mL of gentamicin was added to culture media (Sigma-Aldrich, Seelze, Germany). Trypsin-EDTA solution (Life Technologies, New York, NY, USA) was used for subcultures. Complexes 1, 2 and 3 were dissolved in dimethyl sulfoxide (DMSO, Sigma-Aldrich) prior to cell culture experiments. The cells as well as media were collected after each experiment. The automatic cell counter Countess (Gibco Laboratories, Grand Islands, NY, USA) was used for a precise measurement of cells number. The inverted light microscope Olympus CKX 41SF-5 (Olympus, Germany) was used for the inspection of the morphology of cell culture.
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4

Metabolic Reagents for Cell Culture

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D-glucose, fatty acids, D-fructose, culture media, and other basic reagents were obtained from Sigma-Aldrich (St.-Louis, MO, USA).
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5

Screening Thioether Compounds in C. elegans

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Culture media was purchased from Sigma-Aldrich. Each thioether (5–10 mg) was dissolved in DMF (50 µL) and inoculated into cultures of C. elegans. The cultures were incubated at 28 °C and 180 rpm for 72 h. Blank experiments were carried out in the absence of C. elegans. After 72 h, the fungal biomass was removed and washed with diethyl ether. The supernatant was extracted into diethyl ether (3 × 50 mL) and dichloromethane (3 × 50 mL), and the combined organic extracts were dried over anhydrous Na2SO4, filtered and evaporated under reduced pressure. The extracts were analysed by 1H and 19F NMR before further purification by HPLC.
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6

Chromosomal Analysis of BPH Patients

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A 5-mL blood sample was collected from each of the 53 BPH patients. Standard-protocol chromosomal investigations were then performed on peripheral blood lymphocyte cultures. The cells were cultured in Roswell Park Memorial Institute (RPMI) culture media (Sigma-Aldrich, St. Louis, MO, USA; 5 mL of RPMI 1640 with 10% fetal calf serum, 5 µg/mL of phytohemagglutinin, 100 U/mL of penicillin, 100 µg/mL of streptomycin, 2mM of L-glutamine) for 72 hours, at which point the cells were harvested. Hypotonic treatment of the cells was performed in 0.075 M KCI for 20 minutes at 37℃. The cells were then washed in a fixative solution (3:1, methanol/glacial acetic acid) overnight and dropped onto clean slides. Preparations were stored at -20℃. The chromosomes were analyzed at a band resolution of 450-550. For each patient, 20 metaphase plates were analyzed by G-banding by use of automated karyotyping software (CytoVision, Leica Biosystems, USA). All chromosomal abnormalities were reported in accordance with the current international standard nomenclature [8 ].
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7

Reagents and Antibodies for Cell Assays

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Culture media, fetal bovine serum, penicillin-streptomycin solution, glutamine, DMSO, and sulforhodamine B (SRB) were purchased from Sigma–Aldrich (St. Louis, MO, USA). Muse kits were obtained from EMD Millipore Bioscience (Billerica, MA, USA). 6-Carboxy-2′,7′-dichlorodihydrofluorescein diacetate (H2DCFDA) was from Molecular Probes (Warsaw, Poland). The antibodies against AKT and phospho-(Ser473)-AKT were from Santa Cruz Biotechnology (Heidelberg, Germany). The PARP antibody was from Cell Signaling Technology (Danvers, MA). Anti-β-actin and anti-rabbit antibodies were from Sigma–Aldrich.
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8

Synthesis of Fluorescent Lipid Nanoparticles

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CIP, potassium hydroxide (KOH), acetic anhydride, DMSO, DCM, sodium cyanoborohydride (NaBH4), oils, surfactants, co-surfactants, pluronic 127, culture media, fluorescent dyes, and Schiff reagent were obtained from Sigma-Aldrich, Germany. All solvents used were of analytical grade.
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9

Cell Proliferation Assay using MTS

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Cell proliferation assays were performed using the CellTiter 96 AQueous One Solution Cell Proliferation Assay (MTS) (Promega, Charbonnières-les-Bains, France), as previously described4 (link),7 (link),87 (link). Briefly, cells (5 × 103 cells per well) were plated in triplicate in 96-well plates. After 48 h, cells were incubated with IL-1β and/or TNFα at the indicated concentrations or vehicle only for 48 h with 100 µL culture media (2% charcoal-stripped FBS) (Sigma-Aldrich). Then, 20 µL MTS solution were added to all wells and cells were incubated for 2 h at 37 °C. Absorbance was then read at 490 nm using a Multiskan microplate reader (Thermo Scientific, Illkirch, France). All values were normalized to the values obtained with vehicle-treated cells to control for unwanted sources of variation.
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10

Isolation and Culture of Primary Rat Hepatocytes

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Fresh primary hepatocytes were isolated from the male Wistar rats (250–300 g). William’s E medium was used as culture media, (Sigma, St. Louis, MO, USA) supplemented with 1 mg/mL bovine serum albumin (BSA) (PAA Laboratories, Pasching, Austria), 10 ng/mL epidermal growth factor, 0.5 mg/mL insulin, 5 nM dexamethasone, 50 ng/mL linoleic acid, 10 units/mL penicillin, and 10 mg/mL streptomycin. The hepatocyte suspension was gently mixed and pipetted onto the collagen-coated cell seeding membrane in a spot-by-spot way so as to make the cell suspension reside on the membrane evenly. The hepatocytes were then maintained either in perfusion, static, or collagen sandwich culture (as control) in the CO2 incubator with 5% CO2 and 95% humidity at 37 °C. For the sandwich culture, an overlay of 0.3 mg/mL collagen was added onto the cells the following day.
The animals used in the experiments were handled under the approval of the Institutional Animal Care and Use Committee (IACUC) of the National University of Singapore (NUS). No human samples or participants were used, and no other ethics approval is required.
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