The largest database of trusted experimental protocols

45 protocols using anti mouse irdye 800cw

1

Western Blot Detection of Trypanosome Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blot analysis was performed as previously described (Salmon et al., 2012a (link)) with modifications for detection of CARP1. Briefly, lysates of 3-5×106 trypanosomes were separated on 10% polyacrylamide gels, transferred to a PVDF membrane via semi-dry blotting and blocked with Kem-En-Tec synthetic blocking buffer for 1 h at room temperature. The blots were incubated with primary antibodies (rabbit anti-CARP1, 1:1000; mouse anti-PFR-A/C [(Kohl et al., 1999 (link)), 1:2000; PFR, paraflagellar rod protein)] overnight at 4°C, followed by secondary antibody (IRDye680LT anti-rabbit and IRDye800CW anti-mouse, LI-COR, both 1:5000) detection for 1.5 h at room temperature. For detection of His-tagged proteins expressed in E. coli, proteins were blotted onto PVDF membranes and blocked with 5% milk for 1 h at room temperature, followed by incubation with mouse anti-His (1:1000, BioRad MCA1396GA) overnight at 4°C and secondary antibody detection with IRDye800CW anti-mouse (1:5000, LI-COR).
+ Open protocol
+ Expand
2

Protein Extraction and Western Blotting

Check if the same lab product or an alternative is used in the 5 most similar protocols
Proteins were extracted using RIPA Lysis buffer containing Phosphatase Inhibitor Cocktail (Sigma Aldrich, Sydney, Australia) according to the manufacturer’s instructions. Protein concentration was quantified using a BCA Protein Determination Kit (Pierce) as per the manufacturer’s instructions and absorbance read at 562 nm on a PerkinElmer VICTOR X Multilabel Plate Reader. Western blots were performed as previously described [19 (link)], utilizing rabbit antibodies against phospho-STAT3 (Tyr 705), total-STAT3, BCL2 and ICAM-1 (Cell Signaling, Beverly, MA, USA), and a mouse monoclonal antibody against GAPDH (Millipore Technologies, Sydney, Australia) at 1:1000 dilution, followed by anti-rabbit IRDye™ 680 CW and anti-mouse IRDye™ 800 CW (LI-COR Biosciences, Nebraska, USA) at 1:10000 dilution in 5% (w/v) BSA in TBS containing 0.1% Tween. Images were obtained using an Odyssey Imaging System (LI-COR Biosciences) and analysed with ImageJ (NIH).
+ Open protocol
+ Expand
3

Hirudin's Anti-inflammatory Effects

Check if the same lab product or an alternative is used in the 5 most similar protocols
Forty-eight male Sprague-Dawley (SD) rats weighing between 250 and 300 grams were obtained from the Animal Experimental Centre of Guangxi Medical University. The animal handling protocol was in accordance with the Regulations of Laboratory Animal Care [3 ]. The rats were housed singly in polycarbonate cages at 24°C in a humidity-controlled environment with a 12-hour day/night cycle during the preoperative and postoperative periods. The rats were allowed free access to water and rat chow.
Lyophilized natural hirudin powder (Patent number ZL03113566.8, Lot number KK-001) was provided by Nanning JinXueHuang Bioengineering Co. Ltd. (Guangxi, China). Anti-Pp38-MAPK rabbit antibody (cat. #4511), anti-p38-MAPK rabbit antibody (cat. #8690), and anti-GAPDH rabbit antibody (cat. #5174) were purchased from Cell Signalling Technology (Beverly, MA, USA). Anti-ICAM-1 mouse antibody (sc-8439), anti-TNF-α rabbit antibody (sc-8301), anti-IL-6 rabbit antibody (sc-1265-R), anti-NF-κB p65 rabbit antibody (sc-372), anti-pNF-κB rabbit antibody (sc-101748), and anti-GAPDH mouse antibody (sc-365062) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). The secondary antibodies (anti-rabbit IRDye-800CW and anti-mouse IRDye-800CW) were purchased from LI-COR Biosciences (Lincoln, NE, USA).
+ Open protocol
+ Expand
4

Validating Transfections and Knockdowns for WB and IP

Check if the same lab product or an alternative is used in the 5 most similar protocols
For western blot (WB) validation of positive transfections and endogenous KDs, we used the following primary antibodies: mouse anti-V5 monoclonal antibody (46-0705, Invitrogen), rabbit anti-FOXA1 M2 polyclonal antibody (GTX100308, Gene-Tex), and mouse anti GAPDH monoclonal antibody (AM4300, Invitrogen). We used the following secondary antibodies for WB: anti-mouse IRDye® 680 RD (925-68072, LICOR) and anti-mouse IRDye 800 CW (925-32213, LI COR).
For endogenous immunoprecipitation, we used the following antibodies: anti-FOXA1 M2 rabbit polyclonal antibody (GTX100308, Gene-Tex), anti-TET1 mouse monoclonal antibody (GTX627420, Gene-Tex), anti-TET2 Rabbit monoclonal antibody (D6B9Y, cell signalling technologies), normal rabbit IgG (2729S, cell signalling technologies), normal mouse IgG (sc-2025, Santa Cruz), and protein G Dynabeads (10004D, Invitrogen).
+ Open protocol
+ Expand
5

Protein Expression Analysis in Patient Fibroblasts

Check if the same lab product or an alternative is used in the 5 most similar protocols
Proteins were extracted from fibroblast samples from Patients IV:14 and V:1 and two age-matched controls by homogenization following standard and cell fraction protocols summarized in the Supplementary material. Primary antibodies used were anti-β-actin (AC15; Sigma–Aldrich), anti-ATP5H (SAB4500107; Sigma–Aldrich), anti-DRP1 (sc-271583; Santa Cruz), anti-GAPDH (G9545; Sigma–Aldrich), anti-LAMP1 (H4A3; DSHB), anti-LC3 (NB100-2220; Novus Biological), anti-MFN1 (sc-166644; Santa Cruz), anti-SAMD9L (25173-1-AP; Proteintech), anti-SQSTM1 (2C11; Thermo Fisher Scientific) and anti-VDAC (D73D12; Cell Signaling). Infrared-dye conjugated secondary antibodies anti-mouse IRDye-800CW and anti-Rabbit IRDye 700CW (Li-Cor) were used. Signals were detected and analysed with Odyssey analyser software (Li-Cor).
+ Open protocol
+ Expand
6

Characterization of Antibody Neutralization

Check if the same lab product or an alternative is used in the 5 most similar protocols
For western blot, primary antibodies were mouse anti-myosin (Sigma), rabbit anti-pan 14-3-3 (Cell Signaling), and rabbit anti-CD13 (Abcam). Secondary antibodies included anti-mouse IRDye 800 CW and anti-rabbit IRDye 800 CW (LI-COR). For antibody neutralization experiments, we treated cell culture medium with a 1:200 dilution of the primary antibody for pan-14-3-3 or CD13, or the respective heat-inactivated control for 48 h.
+ Open protocol
+ Expand
7

Western Blotting Analysis of Histone Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Six mice of NaB- and Veh-treated groups were used for western blotting. Mice were killed by cervical dislocation and the cortex and the hippocampus were quickly dissected. Histone protein and total protein were prepared from both tissues as previously described, respectively (Shechter et al., 2007 (link); Li et al., 2011 (link)). Purified proteins were separated on SDS-PAGE and quantified using Odyssey LI-COR. GAPDH (1:5000, Bioworld, St. Louis Park, MN, USA) was used as loading control. Commercial primary antibodies used include Acetylated Histone 3 (Ac-H3; 1:2000, Upstate Biotechnology, Merck Millipore, Darmstadt, Germany), Histone 4 (1:1000, Bioworld, St. Louis Park, MN, USA), Tau-P (phospho S199 + S202; 1:1000, Abcam, Cambridge, UK), Caspase 3 (1:500, Bioworld, St. Louis Park, MN, USA), cleaved Caspase 3(1:100, chemicon, Merck Millipore, Darmstadt, Germany), Bcl-2 (1:500, Bioworld, St. Louis Park, MN, USA) and glial fibrillary acidic protein (GFAP; 1:500, ZSGB-Bio, Beijing, China). Secondary antibodies used included anti-Mouse IRDye 800CW and anti-Rabbit IRDye 800CW (1:5000, Li-Cor Biosciences, Cambridge, UK).
+ Open protocol
+ Expand
8

Protein Expression Analysis of PASMCs

Check if the same lab product or an alternative is used in the 5 most similar protocols
PASMCs were stimulated with rhOPG (50 ng ml−1) (R&D systems), alongside quiesced cells (negative control) for 10 and 60 min, before lysing. Cell lysates were mixed with sample buffer (Life Technologies, Carlsbad, CA, USA) and sample reducing agent (Life Technologies), denatured by heating and subjected to gel electrophoresis. The membranes were then incubated with primary antibodies against phospho-CDK4, phospho-HSP27, total mTOR, phospho-mTOR (1:500) and GAPDH (1:1000) (Cell Signalling Technology), CDK5 (1:500) (Abcam), or β-actin (1:1000) (Santa Cruz Biotechnology, Heidelberg, Germany). Membranes were then incubated with anti-Rabbit IRDye 800CW and anti-Mouse IRDye 800CW (Li-COR, Lincoln, NE, USA) and signal detection and band density quantification was performed using the LiCOR Odyssey SA system.
+ Open protocol
+ Expand
9

Signaling Pathways Activation in Neurodegenerative Diseases

Check if the same lab product or an alternative is used in the 5 most similar protocols
VEGF165 (VEGF), SU1498, UBP310, rabbit monoclonal anti‐GluA2, goat polyclonal anti‐Flk1, and anti‐mouse IgG‐Cy5 were purchased from Abcam (Cambridge, UK). Rabbit polyclonal anti‐phospho‐PKCα (Thr638, p‐PKCα), rabbit monoclonal anti‐PKCα, and rabbit polyclonal anti‐GluA1 were purchased from Abways Technology (Shanghai, China). Rabbit polyclonal anti‐pan‐cadherin and rabbit polyclonal anti‐Flk1 were purchased from Cell Signaling Technology (Beverly, MA). Mouse monoclonal anti‐phosphotyrosine (PY20), rabbit IgG, and mouse polyclonal anti‐GFAP were purchased from Merck Millipore (Billerica, MA). Anti‐rabbit IRDye 680 and anti‐mouse IRDye 800CW were purchased from LI‐COR bioscience (Lincoln, NC). Rabbit polyclonal anti‐Flt1, rabbit polyclonal anti‐Flk1, and horseradish peroxidase (HRP)‐conjugated anti‐rabbit/mouse IgG were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Glutamate, CNQX, and D‐AP5 were purchased from Sigma‐Aldrich (St. Louis, MO). Fluo‐4AM, lipofectamine 2000, anti‐goat IgG‐Alexa Fluor 488, anti‐rabbit IgG‐Alexa Fluor 594, and rabbit monoclonal anti‐phosphoserine (pSer) were purchased from Thermo Fisher Scientific (Waltham, MA). Calphostin C was purchased from Tocris Bioscience (Bristol, UK).
+ Open protocol
+ Expand
10

Immunoblotting Staining Protocols

Check if the same lab product or an alternative is used in the 5 most similar protocols
In Fig. 3A, membranes were stained with mouse anti-FLAG (1:5,000) (cat #3724, Sigma), mouse anti-tubulin (1:10,000) (cat # T5168, Sigma), and rabbit anti-HA (1:3,000) (cat #3724, Cell Signaling). After washing, membranes were incubated with an anti-rabbit IgG horseradish peroxidase-conjugated secondary antibody (1:10,000) (cat #211032171, Jackson ImmunoResearch, West Grove, PA, USA) and an anti-mouse IRDye 800CW (1:10,000) (cat #C70919-05, LI-COR, Lincoln, NE, USA).
In Fig. S4, membranes were stained with mouse anti-CMV pp65 antibody (cat #53489, Abcam, Cambridge, UK) (1:1,000) and mouse anti-tubulin (1:10,000) (cat # T5168, Sigma). Secondary antibody was a goat anti-mouse IRDye 680LT (1:10,000) (cat #926-68020, LI-COR).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!