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Rabbit anti m6a

Manufactured by Synaptic Systems
Sourced in Germany

Rabbit anti-m6A is an antibody specifically designed to detect the presence of N6-methyladenosine (m6A) modification in RNA samples. This antibody is a useful tool for researchers studying RNA epigenetics and the role of m6A in various biological processes.

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7 protocols using rabbit anti m6a

1

Characterization of RNA Methylation Regulators in Adipogenesis

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3T3-L1 pre-adipocytes were obtained from ATCC (Manassas, VA). The human FTO and mouse RUNX1T1 genes were cloned into pEGFP-C1B56 (link). Human SR plasmids were bought from OriGene Technologies (Rockville, MD). The expression constructs were generated using PCR and subcloned into pCS2+ vectors with an N-terminal FLAG tag57 (link). Polyclonal rabbit anti-FTO antibody was affinity-purified from rabbits immunized with 6×His-tagged full-length human FTO protein as previously reported9 (link). Polyclonal rabbit anti-ALKBH5 antibody was generated against synthesized peptide (RKYQEDSDERSD, 58-70 amino acids of human ALKBH5) by CWBio (Beijing) as previously reported34 (link). The primary antibodies were purchased from commercial sources: rabbit anti-METTL3 (MT-A70; 15073-1-AP, Proteintech Group); rabbit anti-RUNX1T1 (15494-1-AP, Proteintech); mouse anti-β-tubulin (t-5293, Sigma); rabbit anti-m6A (202003; Synaptic Systems); mouse anti-HA (cw0092B, CWbiotech); rabbit anti-Flag (F7425, Sigma); mouse anti-Flag (F1804, Sigma). The secondary antibodies used for immunoblotting and dot-blotting: anti-Rabbit IgG-HRP (p0448, dakocytomation); anti-Mouse IgG-HRP (p0161, dakocytomation).
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2

Protein Expression and Quantification

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The primary and secondary antibodies were purchased from commercial sources as follows: Mouse anti-FTO (Santa Cruz Biotechnology, sc-271713), Rabbit anti-Bax (CST, 2772), Rabbit anti-Bcl-2 (CST, 2876), Mouse anti-PCNA (Santa Cruz Biotechnology, sc-56), Mouse anti-Ki67 (Santa Cruz Biotechnology, sc-23900), Rabbit anti m6A (Synaptic Systems, 202003), Rabbit anti-Actin (Sigma Aldrich, A2547), Mouse anti Tubulin (Santa Cruz Biotechnology, sc-365791). HRP conjugated goat anti-rabbit IgG (CWbio, CW0156) and HRP conjugated goat anti-mouse IgG (CWbio, CW0102S).
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3

m6A RNA Immunoprecipitation Protocol

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DNA was denatured by incubating at 95°C for 10 min and then immediately placed on ice for 5 min. 200 μl of cold water and 500 μl of cold 5× DIP buffer (50 mM NaPO4, pH 7.0, 700 mM NaCl, 0.25% Triton X-100) were added to bring the volume up to 1 ml. 50 μl was taken aside as input. 25 μl of 20 mg/ml BSA and 1.8 μg of antibody (Synaptic Systems rabbit anti-m6A, Cat 202–003) were added to the rest of the sample and rotated overnight at 4°C. 50 μl of Protein A magnetic Dynabeads (Thermo Fisher, Cat # 10,002D) were added to the sample and rotated at 4°C for 1 hr. Magnetic beads were immobilized using a magnetic rack and washed by resuspension and rotation for 5 min at 4°C in 1 ml of various cold buffers in the following order: 2× with 1× DIP buffer + 0.05% Tween-20, 1× with 1× DIP buffer. For elution, beads were resuspended in 190 μl of DIP digestion buffer (50 mM Tris–HCl, pH 8.0, 10 mM EDTA, 0.5% SDS) + 10 μl of 10 mg/ml Proteinase K (New England Biolabs, Cat # P8107S). DIP digestion buffer was added to input samples up to 200 μl. Both the input and IP samples were incubated at 50°C for 2 hr and then cleaned up using the Qiaquick PCR Purification Kit (Qiagen, Hilden, Germany, Cat # 28104) and eluted in 35 μl of water.
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4

Immunohistological Analysis of Neuronal Markers in DRGs

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Immunohistology was performed as described previously (Weng et al., 2017 (link)). Briefly, samples
were collected from perfused animals, post-fixed overnight in 4% PFA
in PBS, and cryoprotected in 30% sucrose (wt/vol) for 24 hr at
4°C. Samples were sec tioned to 20 m and mounted onto slides.
Primary antibody was applied at 4°C overnight. Seco ndary antibody
was applied for 2 hr at room temperature. The following primary antibodies
were used in this study: rabbit anti-m6A (Synaptic Systems; 212B11; 1:2000),
rabbit anti-ATF3 (Santa Cruz; sc-188; 1:500), rabbit anti-PGP9.5 (AbD
Serotec; 7863-0504; 1:800), rabbit anti-SCG10 (Novus Biologicals;
NBP1-49461, 1: 2000), and anti-cleaved (active) form of caspase 3
(Invitrogen; 9H19L2; 1:500). Secondary antibodies corresponding to the
primary antibody species were Cy2–, Cy3– or Cy5 conjugated
(Jackson ImmunoResearch; 1:500). The images were acquired by confocal
microscopy (Zeiss 710) and analyzed with ImageJ software (National
Institutes of Health).
Quantification of the proportion of ATF3+ neurons
was determined by counting and scoring at least 200 neurons/mouse as
ATF3+ or ATF3(Weng et al., 2017 (link)). A cell was
scored as ATF3+ if there was any fluorescence above the
threshold set in ATF3 cells under the
naïve conditions. Sections were randomly chosen from cross-sectioned
L4/L5 DRGs.
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5

Cloning and Tagging Human m6A Regulators

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Human cells were cultured in standard cell culture Dulbecco's modified Eagle's medium at 37 °C in a humidified incubator with 5% CO2(v/v). The human METTL3 gene was cloned into pCMV-Myc (Invitrogen), S-protein/FLAG/SBP (streptavidin-binding protein) triple-tagged destination vector48 (link) or pGEX-5×-2 (GE healthcare). The human WTAP gene was cloned into p3XFLAG-CMV-14 (Sigma) or pProEX-HTb (Invitrogen). The human METTL14 gene was cloned into pcDNA3-HA (Invitrogen). The following antibodies were used: rabbit-anti-METTL3 (Abcam), mouse-anti-METTL3 (Abnova), mouse-anti-WTAP (Santa Cruz), rabbit-anti-METTL14 (Atlas), rabbit-anti-m6A (Synaptic Systems) and other antibodies included in Supplementary information, Data S1.
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6

Immunoblotting with FTO and m6A Antibodies

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The primary and secondary antibodies were purchased from commercial sources as follows: Mouse anti-FTO, Mouse anti-Mad2, Mouse anti-Cdc20, Mouse anti-Bub1, Mouse anti-Bub1b, Mouse anti-Bub3, Mouse anti Tubulin (Santa Cruz Biotechnology), Rabbit anti m6A (Synaptic Systems), Rabbit anti-Actin (Sigma-Aldrich). HRP-goat anti rabbit IgG (CWbio) and HRP-goat anti mouse IgG (CWbio).
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7

RNA m6A Binding Verification by Dot Blot

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RNA m6A dot blotting was employed to verify m6A binding with anti-m6A antibody. HT22 cells were collected at 95% confluence, and total RNA was isolated and purified according to the standard protocol of the Total RNApure Kit (#ZP404-1, ZOMANBIO, China). The 6 μg RNA suspended in 200 μL RIP lysis buffer (20 mM Tris-HCl pH 7.5, 150 mM NaCl, 1 mM EDTA, 0.5% NP-40) supplemented with 0.2 μL RNase inhibitor (#N8080119, Thermo Fisher Scientific), and incubated overnight at 4 °C with magnetic beads bound with 5 μg of rabbit anti-m6A (#202003, Synaptic Systems, Germany) or rabbit anti-IgG (#AC005, ABclonal, China) antibodies. After IP, the aliquots of sample solution were then detected by dot blotting analysis to verify m6A binding. Briefly, the aliquots above were added to the nitrocellulose membrane (#66485; Biosharp, China). The membrane was then cross-linked by UV light, sealed for 30 min, and incubated overnight at 4 °C in rabbit anti-m6A antibody (1:1000, #202003, Synaptic Systems, Germany). After that, the membrane was washed in TBST thrice for 5 min and further incubated for 2 h in corresponding Dylight™ 800 conjugated anti-rabbit IgG (H&L) (GOAT) antibody (1:10,000, #611–145-002, ROCKLAND, USA) at room temperature (~25 °C). After washing thrice again in TBST, the reactive bands were visualised using an Odyssey IR fluorescence scanning imaging system (LICOR, USA).
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