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Quickgene dna whole blood kit

Manufactured by Fujifilm
Sourced in Japan

The QuickGene DNA whole blood kit is a laboratory equipment product designed to extract DNA from whole blood samples. It provides a convenient and efficient method for DNA isolation, enabling users to obtain high-quality DNA for various downstream applications.

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22 protocols using quickgene dna whole blood kit

1

DNA Extraction from Tumor and Blood Samples

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For Institut Curie cohort, DNA was extracted by the Centre de Ressources Biologiques (Institut Curie tumor biobank) from frozen samples using phenol (Invitrogen), then subsequently purified on Zymo-Spin IC (Zymo Research). DNA was extracted from paired whole blood samples using the QuickGene DNA whole-blood kit with QuickGene-610L equipment (Fujifilm, Japan). DNA concentrations were quantified by Qubit (Thermo Fisher Scientific). Integrities were assessed by a BioAnalyzer 2100 device (Agilent Technologies, Santa Clara, CA, USA). For Rigshospitalet cohort, DNA/RNA was extracted from frozen tumor samples using Norgen (Biotek Corp.) kit and from blood samples using QIAamp DNA Blood and Tissue kit (Qiagen, Manchester, UK) as per manufacturer’s instructions. Concentrations were quantified by Qubit (Thermo Fisher Scientific).
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2

Genomic DNA Extraction and Linkage Analysis

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Genomic DNA was extracted from the peripheral blood samples of all subjects using a Quick Gene DNA whole‐blood kit and Nucleic Acid Isolation System QuickGene‐610 L (Fujifilm, Tokyo, Japan) according to the manufacturer's protocol.
Genotyping and genomewide linkage analysis of 15 individuals in family 1 were carried out using an Illumina Human Omni ZhongHua‐8 BeadChip (Illumina, San Diego, CA, USA). Multipoint parametric linkage analysis was performed in Merlin by using pruned autosomal single‐nucleotide polymorphisms (SNPs) and assuming a dominant inheritance model for the disease phenotype.
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3

Genotyping of Whole Blood DNA

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Total genomic DNA from whole human blood samples was isolated using the Quickgene DNA Whole Blood Kit according to the manufacturer’s instructions (Fujifilm, Düsseldorf, Deutschland). The TaqMan SNP Genotyping assay (Applied Biosystems, Foster City, CA, USA) was used in DNA samples to determine the respective genotypic groups. The allelic discrimination reaction was performed according to the manufacturer's instructions on an ABI Prism 7500 sequence detector (assay ID: C_8989067_10; Applied Biosystems, Foster City, CA, USA). Genotype frequencies were in Hardy-Weinberg-equilibrium.
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4

Automated Genomic DNA Extraction from Whole Blood

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QuickGene DNA whole blood kit (FUJIFILM, Cat. No. DB-L) was used with Automatic DNA/RNA Extraction System (FUJIFILM, QuickGene-610L, Japan) to isolate genomic DNA from human blood, which enables automatic extraction of about 50 μg of DNA from 2 ml of whole blood. Quantitative PCR experiments were performed using a CFX96 Real-Time PCR Detection System (Bio-Rad, Hercules, CA) according to standard protocol. The quantitative multiplexing PCR assay of human sample was performed using 100 pg DNA and SYBR-Green assay of mouse sample was performed using 500 pg DNA. Standard curves of genomic DNA ranging from 2.5 ng to 4 pg were performed with 5 times dilution. The slope of linear regression to the standard curve was nearly −3.32, which means that the primer efficiency and multiplexing effectiveness were acceptable. All RT-PCR reactions were performed in triplicates.
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5

Foxp3 Polymorphisms in Kidney Transplantation

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DNA was extracted from the peripheral blood of 231 patients who had kidney transplantation between January 1996 and December 2004 by using the LaboPass Genomic DNA Extraction Kit (COSMO, Seoul, Korea) or QuickGene DNA whole blood kit (Fujifilm, Tokyo, Japan) when HLA genotyping for pre-operation evaluation was performed. For 195 healthy controls, DNA was extracted using LaboPass Genomic DNA Extraction Kit (COSMO, Seoul, Korea) during the period of January 1999 and July 2001. All DNA samples were preserved at –70℃ prior to being used for Foxp3 polymorphisms analyses which were performed during the period of June 2015 and July 2016. Four Foxp3 polymorphisms (rs3761548 A/C, rs2280883 C/T, rs5902434 del/ATT, and rs2232365 A/G) were analyzed by PCR with sequence-specific primers (PCR-SSP) with some modifications [20 (link)] (Table 2). PCR was performed by using a 40-µL reaction mixture containing 40 ng DNA, 0.2mM of each primer, 0.8 µL of 10mM dNTP, 2.0mM MgCl2, 1.0 U Taq DNA polymerase (Roche Applied Science, Basel, Switzerland), and 4 µL of 10× reaction buffer. The PCR protocol consisted of an initial denaturation step at 95℃ for 5 min; 35 cycles of denaturation at 95℃ for 30 sec, annealing (temperatures detailed in Table 2) for 30 sec, and extension at 72℃ for 30 sec; and a final extension step at 72℃ for 5 min.
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6

Genetic Evaluation of Familial Ocular Disorder

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The Ethics Committee of the Second Hospital Affiliated to Zhejiang University approved this study, and this study was in accordance with the ethical guidelines of the Declaration of Helsinki. The experiments in this study were completely in accordance with the approved guidelines. Written informed consent was obtained from each participating individuals before sample collection.
In this study, 18 family members, including 5 affected individuals, were enrolled (Fig. 1A). Ophthalmologic examinations including uncorrected visual acuity, cycloplegic retinoscopy and manifest refractive power, best-corrected visual acuity (BCVA), ocular movements, slitlamp, and fundus examination were performed. B-scan ultrasonography (IU22, Philips) and A-scan ultrasonography (CineScan, Quantel Medical) were additionally performed for each affected patient for further evaluation.
DNA from participating family members was extracted from peripheral-blood lymphocytes by standard extraction procedures of the QuickGene DNA whole-blood kit (Fujifilm).
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7

Genomic DNA Extraction and Genotyping using MALDI-TOF-MS

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The genomic DNA was extracted from peripheral blood by QuickGene DNA Whole Blood Kit (Fujifilm, Tokyo, Japan) and according to the manufacturer's agreement. Genotyping was performed using iPLEX chemistry on a matrix-assisted laser desorption/ionization time-of-flight mass spectrometer (MALDI-TOF-MS, named as the MassARRAY system, which is manufactured by Sequenom, San Diego, CA). Polymerase chain reaction (PCR) and extended primers were designed using the online primer design tool Sequenom. Mass spectrum was obtained using Compact Mass Spectrometer and analyzed with MassARRAY Typer 4.0 Software.
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8

Genotyping of PON1 Gene Polymorphisms

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The candidate SNPs (single nucleotide polymorphisms) were selected from 3 public databases: the International HapMap Project database (http://hapmap.ncbi.nlm.nih.gov/), the Functional Element SNPs database (http://sysbio.kribb.re.kr:8080/fesd/index.jsp) [23 (link)], and the SNPinfo Web Server (http://snpinfo.niehs.nih.gov/). The selection criteria were as follows: (i) haplotype-tagging SNPs with an R-square cutoff of 0.9 and minimum minor allele frequency in CHB and JPT population of 0.05; (ii) SNPs located in functional regions, such as the promoter, start codon, splice site, coding exon, and stop codon; and (iii) non-synonymous SNPs. Finally, we selected seven SNPs (rs662, rs13306698, rs854572, rs854573, rs854552, rs854565, and rs854568) in the PON1 gene for genotyping.
Genomic DNA was isolated from peripheral blood using the QuickGene-810 Nucleic Acid Isolation System (Fujifilm, Tokyo, Japan) and the QuickGene DNA Whole Blood Kit in accordance with the manufacturer’s protocol; the DNA samples were stored at-70°C until analysis. SNP genotyping was performed using the VeraCode GoldenGate assay (Illumina, San Diego, CA, USA). All SNPs were in Hardy-Weinberg equilibrium in cases and controls, and the call rate for the seven SNPs was 100%. S1 Table presents detailed information on the seven SNPs and allele frequencies.
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9

Mutation Analysis of OCRL Gene

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Mutation analysis was carried out using genomic DNA from peripheral blood using a QuickGene DNA whole blood kit (Fujifilm, Tokyo, Japan). Twenty-three exons, including coding sequences of the OCRL gene and their intronic flanking sequences, were amplified by polymerase chain reaction (PCR) with 20 sets of primers. After PCR amplification with Go Taq polymerase (Promega, Madison, WI, USA), DNA sequencing was performed using the same primers as those in PCR and a BigDye Terminator V3.1 Cycle Sequencing Ready Reaction kit (Applied Biosystems, Foster City, CA, USA).
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10

Genomic DNA Extraction and Genotyping

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Genomic DNA was extracted from whole blood samples using a DNA Extractor WB-Rapid Kit (Wako, Osaka, Japan) or a Quick Gene DNA Whole Blood Kit (Fujifilm, Tokyo, Japan) with a Quick Gene-800 (Fujifilm) according to the manufacturer's protocol.
The polymorphic regions were amplified with a Taqman SNP genotyping assay with a 7500 Real-Time PCR System using 10 ng genomic DNA in a 20 µL reaction mixture containing 2× FastStart Universal Probe Master (Roche, Mannheim, Germany) and forward and reverse primers, encompassing the polymorphic sites (T/C at rs3749117 and G/C at rs35771982). The primers were predesigned by Taq-Man Gene Expression Assays (Applied Biosystems) (Assay IDs, C_25805618_10 and C_25621628_10, respectively). The amplification protocol consisted of initial denaturation at 95°C for 2 min, followed by 35 cycles of denaturation at 95°C for 30 sec, annealing for 30 sec at the appropriate temperature for the primer pair, extension at 72°C for 30 sec, and final extension at 72°C for 5 min.
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