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7 protocols using fc receptor blocking antibody

1

Single-cell Isolation and Flow Cytometric Analysis of Tumor, Spleen, and Lymph Node Cells

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Tumors were harvested (n = 6 mice/tumor type/time point) and dissociated into single-cell suspensions by enzymatic digestion in Hanks’ balanced salt solution (HBSS) (Gibco) containing 1% collagenase (Sigma-Aldrich, St. Louis, MO, USA), 2% FBS, and 1% penicillin-streptomycin for 60 min at 37 °C. Suspensions were mechanically agitated and passed through 70-μm strainers (BD Biosciences, San Jose, CA, USA). Spleens (Sp), and inguinal LN were suspended in an ammonium-chloride-potassium lysing buffer (ThermoFisher Scientific) and passed through 70-μm cell strainers. Cells were washed in PBS then fixed for 15 min using 4% paraformaldehyde. For immunostaining, 106 cells from Sp, LN, or tumor samples were treated with an Fc receptor-blocking antibody (BioLegend, San Diego, CA, USA, anti-mouse CD16/32) in staining buffer (PBS containing 0.5% bovine serum albumin (BSA) and 2 mM ethylenediaminetetraacetic acid (EDTA)) for 10 min, followed by primary antibodies (Table S1) for 45 min on ice. Ten thousand events were acquired from each sample on an AccuriTM C6 Cytometer (BD Biosciences) and data was processed using FlowJo software.
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2

Multi-parameter Flow Cytometry Protocol

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A maximum of 5 ×105 cells were stained using a combination of antibodies (Table 2.2). All staining was performed in PBS + 10% FCS, except where multiple Brilliant Violet dyes were used in the same panel. Here, cells were stained in Brilliant Stain Buffer (BD Biosciences). All staining was done in the presence of 5 μl Fc receptor blocking antibody (Biolegend) per sample. Stains were performed for 30 minutes at 4 oC and followed by two washes with PBS containing 2% FCS and 2 mM EDTA before fixation in 0.5% PFA in PBS.
For phosflow cytometry, cells were surface stained and fixed with cytofix buffer (BD Biosciences). This was followed by permeabilisation with ice-cold Perm Buffer III (BD Biosciences) and staining with antibodies for phospho-p38.
Apoptotic cells were detected using the Annexin V staining kit (BD biosciences) according to manufacturer’s protocol.
Samples were acquired on an LSR Fortessa (BD Biosciences). Analysis was performed using FlowJo (Treestar Inc.).
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3

Isolation and Characterization of Splenic Cells

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Spleens were harvested and digested with collagenase B (250 μg/ml; Roche) and DNase I (30 U/ml; EMD) for 40–60 min at 37°C with stirring in Iscove’s modified Dulbecco’s media containing 10% FCS, L-glutamine, sodium pyruvate, non-essential amino acids, penicillin/streptomycin and β-ME. The reaction was stopped by addition of EDTA to a final concentration of 5 mM, and cells were incubated on ice for 5 min. Red blood cells were lysed with ACK lysis buffer. Cells were passed through a 70-μm strainer before cell counting with acetic acid. Cell surface staining was performed in FACS buffer (0.5% BSA, 2 mM EDTA, 0.02% NaN3 in 1X PBS) in the presence of Fc receptor blocking antibody (Clone 93, BioLegend) for 20 min at 4 °C followed by streptavidin staining if necessary. Cells were fixed in 4% paraformaldehyde (Electron Microscopy Sciences) for 20 min at room temperature. Flow cytometry was performed on a FACSCanto II (BD Bioscience) and data was analyzed with FlowJo (Tree Star Inc.).
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4

Macrophage Surface Marker Analysis

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For surface marker analysis, macrophages were harvested with enzyme-free cell dissociation buffer (Cat# 13151014; Gibco, Waltham, MA, USA). Cells were resuspended in ice-cold FACS buffer (consisting of PBS and 0.5–1% BSA) at a concentration of 1-5 × 106 cells/mL. To block non-specific binding of the primary antibodies, Fc receptor blocking antibody (Cat# 422301; BioLegend, San Diego, CA, USA) was added to the cell suspension. Cells were incubated with the conjugated primary antibodies or the isotype-matched control in the dark for at least 30 min at 4 °C. Cells were washed three times with ice-cold FACS buffer before analyzing with a FACSAria Fusion flow cytometer (Becton Dickinson, Franklin Lakes, NJ, USA). Data were analyzed using FlowJo (version 10, Ashland, OR).
The following antibodies (all purchased from Invitrogen, Waltham, MA, USA) were used for staining surface markers: CD11b-APC (1:20 dilution; Cat# 17-0118-41), CD14-PE (1:20 dilution; Cat# 12-0149-42), CD16-FITC (1:10 dilution; Cat# 11-0168-41), CD86-PE (1:20 dilution; Cat# 12-0869-41), CD163-APC (1:20 dilution; Cat# 17-1639-41) and isotype controls: mouse-IgG1 kappa-APC (1:40 dilution; Cat# 17-47148-1), mouse-IgG1 kappa-PE (1:40 dilution; Cat# 12-4714-81), mouse-IgG1 kappa-FITC (1:200 dilution; Cat# 11-4714-81), mouse-IgG2b kappa-PE (1:40 dilution; Cat# 12-4732-81).
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5

Multiparametric Flow Cytometry for Immune Cell Profiling

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The following anti-mouse antibodies were from eBioscience: FITC-anti-F4/80, APC-anti-CD80, PE-Cy7-anti-CD86, PE-anti-MHC-II, PE-anti-CD11b, FITC-anti-Gr-1, APC-Cy7-anti-CD3, PerCP-Cyanine5.5-anti-CD4, APC-anti-CD8a, PE-anti-IFN-γ, and FITC-anti-IL-17. For intracellular cytokine staining, cells were stimulated with PMA (50 ng/ml, Enzo Life Sciences) and ionomycin (1 nM, Enzo Life Sciences) in the presence of brefeldin A (1 mg/ml, Enzo Life Sciences) for 4–5 h. Surface staining was performed in FACS buffer (0.5% BSA, 2 mM EDTA, 0.02% sodium azide in PBS) in the presence of Fc receptor blocking antibody (BioLegend) for 20 min at 4°C. Cells were fixed in 4% paraformaldehyde (Electron Microscopy Sciences) for 20 min at room temperature followed by permeabilization (0.1% BSA, 0.5% saponin in PBS) or with the BD Cytofix/Cytoperm Fixation and Permeabilization Kit. Cytokine staining was performed in permeabilization buffer for 20 min at 4°C. Data acquisition and analysis were performed using BD LSRFortessa X-20 (BD Bioscience) and FlowJo software (Tree Star, Ashland, OR, USA) respectively.
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6

Characterization of Regulatory T Cells

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Single-cell suspensions were initially incubated with an Fc receptor blocking antibody (Biolegend, San Diego, CA, USA) and stained with the following antibodies for surface analysis: anti-human CD3 (SK7, BD Biosciences), anti-human CD4 (RPA-T4, BD Biosciences), anti-human CD25 (M-A251, BD Biosciences), anti-human CD127 (HIL-7R-M21, BD Biosciences), anti-human CXCR3 (1C6, BD Biosciences), anti-human CCR4 (L291H4, Biolegend), and anti-human CCR6 (G034E3, Biolegend). PBMCs were stained with anti-CD3 (SK7, BD Biosciences), anti-CD4 (RPA-T4, BD Biosciences), anti-CD25 (M-A251, BD Biosciences) prior to fixation, permeabilization and staining for Foxp3 (259D, Biolegend). For analysis of ST2+ Tregs, PBMCs were stained for CD4 and ST2 (RMST2-33, Invitrogen, Carlsbad, CA, USA) prior to staining for Foxp3. For analysis of α-smooth muscle actin (α-SMA)+ OFs after coculture with Tregs, OFs were fixed and permeabilized after harvest and stained with an anti-α-SMA antibody (1A4/asm-1, Novus Biologics, Minneapolis, USA).
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7

Murine Monocyte Immunophenotyping by Flow

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Fc receptor blocking antibody (BioLegend, San Diego, CA) diluted in 1% BSA in PBS was added to 100μL non-parenchymal cell suspension for 30 min on ice. To 100μL FcR-blocked cell suspension, saturating concentration of PerCP-CD45 (BioLegend), PE-CD11b (BioLegend), and FITC-F4/80 (BioLegend) diluted in 1% BSA in PBS were added. Samples were incubated in the dark for 30 min. Pellets were washed three times after incubation with 1% BSA in PBS and measured by flow cytometry (FACSCalibur, BD, Franklin Lakes, NJ). Aqua Zombie (BioLegend) was added to assess cell viability. Mouse monocytes were gated on CD45+CD11b+F4/80+ cells. Data were analyzed using FlowJo-V10.
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