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Pbs hsp70 cas9

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PBS-Hsp70-Cas9 is a plasmid that expresses Cas9 protein under the control of the Hsp70 promoter. Cas9 is a RNA-guided DNA endonuclease derived from the CRISPR-Cas9 system, which can be programmed to target specific genomic sequences for genetic manipulation.

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6 protocols using pbs hsp70 cas9

1

CRISPR-Cas9 Genome Editing in Cells

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For human cells, expression vector PX330 (Addgene plasmid 42230) encoding Cas9 and chimeric guide RNA was used (11 (link)). The LBR guides were cloned into expression vector pBluescript with the sgRNA cassette of PX330 and transfected into the K562 line stably transformed with Cas9. For Drosophila cells, Cas9 expression vector pBS-Hsp70-Cas9 (Addgene plasmid 46294) was used in combination with pU6-BbsI-chiRNA construct (Addgene plasmid 45946) (12 (link)). The sgRNAs were designed using CRISPR design (http://crispr.mit.edu/) (13 (link)) and CHOPCHOP (https://chopchop.rc.fas.harvard.edu/) (14 (link)).
The following sgRNA sequences were used:
For the cloning of individual DNA fragments from the edited GFP gene, PCR products were ligated in Zero Blunt vector (Invitrogen) using standard procedures.
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2

CRISPR-based Transgenic Fly Creation

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Injections were conducted by Rainbow Transgenic Flies. The donor plasmid TAREhNU2G (507 ng/μL) was injected along with plasmid EGDhg2t (149 ng/μL), which provided gRNAs for transformation and was constructed previously [42 (link)], and pBS-Hsp70-Cas9 (442 ng/μL, Addgene plasmid #45945), which provided Cas9. A 10 mM Tris-HCl, 100 μM EDTA solution at pH 8.5 was used for the injection. Both lines containing split homing modification [26 (link)] and suppression [47 ] drives were generated in previous studies.
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3

CRISPR/Cas9-Mediated Gene Knockout in OSCs

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Gene knockout in OSCs using the CRIPSR/Cas9 system and isolation of knockout OSCs were performed essentially as described previously (Ishizu et al. 2015 (link)). In brief, OSCs were transfected with 0.2 μg of a plasmid expressing both pBS-Hsp70-Cas9 (Addgene, 46294) and the blasticidin resistance gene and 4 µg of two sgRNA-expressing plasmids (GM76 and E2) using Xfect transfection reagent (TaKaRa Clontech). After incubation for 24 h, blasticidin (Thermo Fisher Scientific, Inc., R210-01) was added to the culture medium at 50 µg/mL. The next day, 5.0 × 103 cells were passaged in 3.5-cm dishes and allowed to grow in blasticidin-containing medium. During culturing, cells were washed with the medium to remove nonadherent dead cells. After 6–7 d of culture, 5.0 × 103 cells were passaged in 6-cm dishes and allowed to grow in blasticidin-containing medium. After further incubation for a few days, colonies were picked and passaged in single wells of 24-well plates. The next day, these colonies were suspended with a Tip Strainer (Bel-Art) and allowed to grow to confluence. To detect the genomic deletion, genomic DNA was extracted using QuickExtract DNA extraction solution (Epicenter) following the manufacturer's protocol, and the genomic region flanking the CRISPR target site was amplified by PCR and then analyzed using MultiNa (Shimadzu).
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4

CRISPR-based CopyCatcher Plasmid Assembly

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One-step assembly with NEBuilder HiFi DAssembly Master Mix was used for cloning of CopyCatcher plasmids91 (link). As depicted in Fig. 1a, left and right homologous arms for each locus flanking gRNA cleavage site were amplified from the w118 wild-type fly genomic DNA. The SA-T2A sequence was amplified from pBS-KS-attB2-SA-T2A-3XGal80-Hsp70 series plasmids (Addgene 62951 and 62952)92 (link), gRNAs-expressing cassette targeting to the first intron of yellow, white, and ple were assembled following online published protocols (CRISPR fly Design-http://www.crisprflydesign.org/) and mCerulean selection marker was amplified from Addgene 27795 plasmid. DsRed was put at the downstream of T2A to indicate the copying events by fluorescence. Following assembly, CopyCatcher plasmids were transformed into NEB 5-alpha chemical competent E. coli cell (NEB C2987). Positive plasmids verified by sequencing were purified with Qiagen Plasmid Midi Kit (#12191), mixed with pBS-Hsp70-Cas9 (Addgene 46294) at 500 ng/μl and 250 ng/μl each, and sent to Rainbow Transgenic Flies, Inc. for injection into w118 wild-type (y[CC] and ple[CC]) or Oregon-R (w[CC]) embryos. By screening the CFP fluorescent eye-marker phenotype, male transformants carrying the y[CC], w[CC] and ple[CC] CopyCatcher elements were identified and followed by genomic insertion confirmation by flanking PCR19 (link).
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5

CRISPR Deletion of the Bombardier Gene

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The bombardier gene (CG18067) was deleted using CRISPR/Cas9 technology according to established protocols (26 (link)). Briefly, a pair of gRNAs designed to delete the region 2R: 20,534,248–20,536,154 were cloned into pU6-BbsI-chiRNA (Addgene plasmid #45946). Homology arms (1,017 bp left and 1,022 bp right) were cloned into pDsRed-attP (Addgene plasmid #51019). The plasmid pBS-Hsp70-Cas9 (Addgene plasmid #46294) was used as the Cas9 source. Constructs were injected into w1118 embryos. F1 progeny were screened for DsRed eyes and homozygous lines were established. See Supplemental Table 1 for gRNA and homology arm primer sequences.
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6

Genome Editing in Drosophila Using CRISPR

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Cloning and injections were performed using established protocols [14 (link)]. A pair of gRNAs designed to delete the region 2R:18,380,931 to 18,391,053 were cloned into pU6-BbsI-chiRNA (Addgene plasmid # 45946). Homology arms (766bp and 840bp left and right, respectively) were cloned into pDsRed-attP (Addgene plasmid # 51019). pBS-Hsp70-Cas9 (Addgene plasmid # 46294) was used as the Cas9 source. Constructs were injected into w1118 flies.
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