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2 protocols using pcr supermix

1

Real-Time qPCR Gene Expression Analysis

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Total RNA was extracted by TRIzol extraction method (Invitrogen), according to the manufacturer's instructions. Equal amounts of RNA (2 μg) were reverse-transcribed into cDNA using the Transcriptor First-Strand cDNA Synthesis Kit (Roche, Indianapolis, IN, USA). The primers were synthesized by Sigma-Aldrich (St. Louis, MO, USA) for the following genes (Table 1).
All samples were tested in triplicate [3 (link)]. Real-time quantitative polymerase chain reaction (qRT-PCR) was performed on a mixture containing 10 μL PCR Supermix (Bio-Rad Laboratories, Hercules, CA, USA), 1 μL forward and reverse primers (Sangon, Beijing, China), 1 μL template DNA, and 8 μL distilled water. The qPCR conditions were as follows: one cycle of initial denaturation (94°C for 3 min), 30 cycles of amplification (94°C for 30 s, 57°C for 30 s, and 72°C for 25 s), one cycle of melting curve measurement (95°C for 5 s, 65°C for 60 s, and a gradual increase in temperature to 97°C), and a cooling period (40°C for 30 s). The data presented were mRNA levels normalized relative to β-actin.
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2

Droplet-based EXPAR for miRNA detection

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All synthetic, HPLC-purified DNA and miRNA (Let-7a, Let-7b, Let-7c, miR-39) (sequences in Table S1) were purchased from IDT (Integrated DNA Technologies, Coralville, IA, USA). Vent (exo-) polymerase, nicking endonuclease Nt.BstNBI, NEbuffer 3.1 and ThermoPol buffer were purchased from NEB (New England Biolabs, Ipswich, MA, USA). RNase inhibitor, Taqman® miRNA reverse transcription kit, Taqman® probes for miRNA including Let-7a and miR-39 (an external control used in RT-qPCR), ROX reference dye and Countess® cell counting chamber slides (for microscopic imaging of the droplets) were purchased from Life Technologies (Carlsbad, CA, USA). EvaGreen® DNA staining dye was purchased from Biotium (Hayward, CA, USA). PCR supermix was purchased from Bio-Rad (Hercules, CA, USA). miRNeasy Serum/Plasma Kit was purchased from QIAGEN (Netherlands). Diethylpyrocarbonate (DEPC) was purchased from Sigma-Aldrich (St. Louis, MO, USA). All solutions for EXPAR were prepared in DEPC-treated deionized water. ExoQuick exosome isolation kit was purchased from System Biosciences (SBI, Mountain View, CA, USA).
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