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Nanodrop system

Manufactured by Implen
Sourced in United States

The NanoDrop system is a compact, single-sample spectrophotometer designed for the rapid and accurate measurement of low-volume samples. It utilizes a patented sample retention technology to enable direct measurement of micro-volume samples without the need for cuvettes or other sample containment devices.

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2 protocols using nanodrop system

1

Quantifying Gene Expression in Kiwifruit

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Total RNA was extracted through a Quick RNA isolation Kit (Huayueyang Biotechnology, Beijing, China). RNA quality was evaluated by agarose gel electrophoresis and using the NanoDrop system (Implen, Los Angeles, CA, USA). cDNA was synthesized with the PrimeScript™ RT reagent Kit with gDNA Eraser (Perfect Real Time) (TaKaRa, Inc., Dalian, China).
Full-length sequences of genes, including CS, Aco, IDH, SDH and DQS were searched in kiwifruit gene database, and qRT-PCR primers were designed by Primer 5.0 software, according to them [48 (link)]. The qRT-PCR primers were synthesized by Sangon Biotechnology, Shanghai, China (Table 2). The qRT-PCR mixture (20 μL) contained 10 μL TB Green™ Premix Ex Taq™ (Tli RNaseH Plus) (TaKaRa, Inc., Dalian, China), 0.5 μL of the forward and reverse primers for each gene, 1 μL cDNA template, and 8 μL ddH2O. The LightCycler® 480 Real-Time PCR System (Applied Biosystems, Waltham, MA, USA) was used to conduct the reaction. The conditions for the qRT-PCR amplifications were as follows—95 °C for 5 min, followed by 40 cycles of 5 s at 95 °C 30 s at 60 °C and 20 s at 72 °C. The β-actin in the kiwifruit was considered as the reference gene for normalization [49 (link)]. All analyses were repeated three times using biological replicates. The relative expression levels were calculated using the 2−ΔΔCT method [50 (link)].
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2

Validating Dietary Fiber DEGs via qRT-PCR

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Candidate differentially expressed genes (DEGs) involved in dietary fiber metabolism were selected for validation by real time quantitative PCR (qRT-PCR). Total RNA was extracted through a TaKaRa MiniBEST Plant RNA Extraction Kit (TaKaRa, Inc., Dalian, China). RNA quality was evaluated by agarose gel electrophoresis and the NanoDrop system (Implen, Los Angeles, CA, USA). cDNA was synthesized with the PrimeScrip RT reagent Kit with gDNA Eraser (Perfect Real Time) (TaKaRa, Inc., Dalian, China). The primer sequences used for qRT-PCR are listed in Table S1. qRT-PCR was performed on an ABI ViiA 7 DX system (Applied Biosystems) using SYBR Premix Ex Taq II (TaKaRa) with the ubiquitin gene as an endogenous control. Data analysis was performed using the 2 -ΔΔCT method. Values for mean expression and standard deviation (SD) were calculated from the results of three independent experiments.
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