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5 protocols using anti rabbit irdye 800

1

Antibodies for Epithelial-Mesenchymal Transition

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The antibodies used were against E-Cadherin (BD 610181), PAI1 (BD 612024), Fibronectin (Sigma-Aldrich), Vimentin (BD 550513), Smad4 (Cell Signaling Technology), CK8 (Abcam), SNAIL (Cell Signaling Technology), LaminA/C (Abcam), LaminA (Sigma), LaminB1 (Abcam) GAPDH (Millipore ABS16), and IRDye-800 anti-Rabbit (Rockland), or IRDye-680 anti-mouse (Rockland), and HRP-conjugated anti-mouse or anti-rabbit (Jackson laboratory) antibodies.
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2

Quantification of JARID1B Protein Levels

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Western blot analysis was used to quantify levels of JARID1B using a previously described protocol [35 (link)]. In brief, 30 µg of hippocampal protein lysate were separated using a 4–20% SDS-PAGE gel (Novex, Life Technologies). Proteins were blotted onto a nitrocellulose membrane (Pierce Protein Biology), blocked with Blocking Buffer for Fluorescent Western Blotting (Rockland Immunochemicals), and incubated with antibodies against JARID1B (Abcam) and beta actin (Sigma). Following PBS + 0.1% Tween–20 washes, blots were incubated in Alexa–700 anti-mouse (Invitrogen) and IR Dye-800 anti-rabbit (Rockland) and scanned by Near-Infrared Fluorescent using the Odyssey Infrared Imaging System (Li-Cor Biosciences). Integrated intensity of protein bands normalized to beta actin was determined using Photoshop CS 4 (Adobe, San Jose, CA, USA).
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Western Blot Analysis of Protein Phosphorylation

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Treated cells in 6-cm dishes were washed with ice-cold phosphate-buffered saline (PBS) containing sodium orthovanadate 2 mM (to preserve the protein tyrosyl phosphorylation state in cells and cells lysates) [25 (link)], collected, resuspended in lysis buffer, and processed as previously described [15 (link), 16 (link)]. Briefly, lysates were vortexed, incubated at 4 °C for 30 min, and centrifuged at 13,000rpm for 15 min at 4 °C. The supernatant was collected and sample buffer containing DTT 0.1 M was added. Proteins were resolved by SDS-PAGE on a 12% polyacrylamide gel and then electrophoretically transferred to a polyvinyllidene fluoride (PVDF) membrane (Millipore) using a semi-dry transfer device (Trans-Blot, Bio-Rad, Hercules, CA, USA). Membranes were subsequently blocked with casein 1% in PBS buffer (Bio-Rad, Hercules, CA, USA) for 2 h at room temperature, incubated with the appropriate primary antibody at 1:1000 dilution overnight at 4 °C. Membranes were incubated with infrared-labeled secondary antibodies (anti-mouse 680 Alexa, Molecular Probes, Eugene, OR, USA) or anti-rabbit IRDYE 800 (Rockland Immunochemicals, Gilbertsville, PA, USA) at 1:15,000 dilutions for 2 h at room temperature. Specific protein bands were detected and quantified using Odyssey Infrared Imaging System and Software version 1.2 from Li-Cor Biosciences (Lincoln, NE, USA).
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Western Blot Protein Detection

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Proteins were separated by SDS-PAGE and transferred to nitrocellulose membranes. The membranes were exposed to antibodies at specific dilutions. Specific protein bands were detected using infrared-emitting conjugated secondary antibodies: anti-mouse 680 Alexa Fluor (Molecular Probes) or anti-rabbit IR Dye 800 (Rockland Immunochemicals), using the Odyssey Infrared Imaging System and the Application software version 2.0 from Li-Cor Biosciences as was previously described [20 (link)]. Blots were quantified by densitometry using GelEval 1.37 software.
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5

Western Blot Protein Detection Protocol

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Western immunoblots were obtained from total protein extracts as described previously [21, 22] . Briefly, treated cells in 6-cm dishes were washed with ice-cold phosphate-buffered saline (PBS) containing 2 mmol/l sodium orthovanadate. Cells were collected by scrapping in 1 ml cold PBS, centrifuged at 13,000 rpm for 5 min at 4 C and the supernatants were discarded. Cells pellets were re-suspended in 50 μl lysis buffer, vortexed, and incubated at 4 C for 30 min followed by centrifugation at 13,000 rpm for 15 min at 4 C. The supernatants were collected, and the concentrations of the supernatant were measured with a BCA protein assay kit (Pierce, Rockford, lL, USA). Proteins were resolved on a 12% SDS-PAGE by loading 25 μg protein and then transferred to a polyvinylidene fluoride (PVDF) membrane (Millipore, (Bedford, MA, USA). The membranes were incubated with blocking buffer (1% casein in PBS) (Bio-Rad, Hercules, CA, USA) for 60 min at room temperature (RT). The membranes were incubated with primary antibody overnight at 4 C. Proteins were visualized using an infrared-emitting conjugated secondary antibodies anti-mouse 680 Alexa Fluor (Molecular Probes, Eugene, OR, USA) or anti-rabbit IRDYE 800 (Rockland Immunochemicals, Gilbertsville, PA, USA) diluted 1:15,000 for 60 min. Band intensities were quantified using Odyssey imaging system (LI-COR Biosciences, Lincoln, NE, USA).
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