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Odyssey imaging software 3

Manufactured by LI COR
Sourced in United States

Odyssey imaging software 3.0 is a comprehensive software solution developed by LI-COR for the analysis and visualization of data from LI-COR's Odyssey imaging systems. The software provides tools for image acquisition, processing, and quantitative analysis of fluorescent signals.

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5 protocols using odyssey imaging software 3

1

Whole Cell Lysate Preparation and Immunoblotting

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Whole cell lysates were prepared using modified radioimmunoprecipitation assay (RIPA) buffer as described previously [50 (link)]. Protein concentration was quantified using the DC™ (detergent compatible) protein assay (Bio-Rad, Mississauga, ON, Canada) and equal amount of proteins were loaded into each lane of a sodium dodecyl sulfate (SDS) polyacrylamide gel and transferred to nitrocellulose membrane. Immunoblotting was performed using the antibodies at 1:1000 dilution. Membranes were scanned and analyzed using an Odyssey® IR scanner and Odyssey® imaging software 3.0 (Li-COR, Lincoln, NE, USA).
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2

Subcellular Protein Fractionation and Quantification

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Whole cell lysates were prepared in a RIPA buffer as described previously [51 (link)]. Cytosolic and nuclear fractions were prepared using the NE-PER Nuclear and Cytoplasmic Extraction Reagents kit (Thermo Scientific, Rockford, IL, USA). Proteins in these samples were quantified using the DC protein assay (Bio-Rad, Mississauga, ON, Canada) and equal amounts of proteins were loaded into each lane for immunoblotting. Membranes were scanned and images were analyzed and quantified using an Odyssey® IR scanner and Odyssey® imaging software 3.0 (LI-COR Biosciences, Lincoln, NE, USA).
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3

Cell Fractionation and Protein Detection

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The NE-PER kit (Pierce, Waltham, MA, USA) was used to prepare cytoplasmic and nuclear fractions.18 (link) Cell membranes were destroyed to deliver the cytoplasmic contents. Integrated nuclei were retrieved from the cytoplastic extracts by centrifugation, and the nuclei were washed with PBS and disrupted to harvest the nuclear extract. Blots were visualized using an Odyssey IR scanner (Li-Cor, Lincoln, NE, USA) with the Odyssey imaging software 3.0 (Li-Cor).
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4

Western Blot Analysis of IL-17A and IL-17F

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At the end of exposure, the explants were stored in −80°C with RNA later (Ambion, Grand Island, NY, USA). Tissues were homogenized, lysed, and the lysate (10 μg) was loaded on 10% acrylamide SDS-PAGE NEXT GEL (Amresco, Solon, Ohio), followed by transfer to nitrocellulose membranes (Bio-Rad, Hercules, Calif). The blots were then blocked for 1 h at room temperature and incubated overnight at 4°C with antibodies specific for IL-17A (R&D Systems, Minneapolis, MN, USA), IL-17 F (Santa Cruz Biotechnology, Santa Cruz, Calif) and GAPDH (Millipore, Temecula, USA). After washing (0.1% Tween-20/PBS), the membranes were incubated with a 1:15,000 dilution of IRDye 800 donkey anti-goat IgG and IRDye 680 goat anti-mouse IgG (Rockland) in blocking buffer and analyzed with an Odyssey IR scanner using Odyssey imaging software 3.0 (LI-COR Biosciences, Inc).
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5

IL-17A/F-induced p38 MAPK activation

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2×106 B cells were starved using medium with 0.1% FBS for 18 hours. Cells were stimulated with 50 ng/ml IL-17A and IL-17F for 0, 10, and 20 minutes and total proteins were extracted using lysis buffer (1% Triton X-100 containing protease and phosphatase inhibitor cocktails (Roche, Mannheim, Germany). Protein lysates (10 µg) were then resolved on 10% acrylamide SDS-PAGE gel and blots were probed with antibodies to phosphorylated p38 MAPK (Millipore) and total p38 MAPK (Millipore). Membranes were analyzed with an Odyssey IR scanner using Odyssey imaging software 3.0 (LI-COR Biosciences, Inc).
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