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Protease inhibitor 1x

Manufactured by Roche

Protease Inhibitor [1X] is a laboratory reagent used to inhibit the activity of proteases, which are enzymes that break down proteins. This product is designed to maintain the integrity of protein samples during extraction, purification, and analysis procedures.

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3 protocols using protease inhibitor 1x

1

Nuclear Extraction and Protein Binding

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Cell pellets were resuspended in cytosolic lysis buffer (10 mM HEPES pH 7.9, 10 mM KCl, 0.1 mM EDTA, 0.4% NP-40, Protease Inhibitor [1X] [Roche]) and shaken on ice for 15 min. After centrifugation at 3,000g for 3 min, pellets were washed once with cytosolic buffer and resuspended in nuclear lysis buffer (20 mM HEPES pH 7.9, 0.4M NaCl, 1 mM EDTA, 10% Glycerol, Protease Inhibitor [1X] [Roche]) and sonicated. Membranes were incubated with BRD9 antibody (Active Motif, Catalog: 61,537) at 1:1,000, BRD7 antibody (Cell Signaling, D9K2T) at 1:1,000, and HDAC1 antibody (Santa Cruz, sc-7872) at 1:500 overnight at 4°C.
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2

Immunoprecipitation of GFP-tagged Proteins

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Infiltrated leaves expressing the protein of interest were powdered in a mortar under liquid N 2 . About 2 g of tissue was weighed, and to it, 3 volumes of lysis buffer (50 mM Tris-Cl pH 7.4, 150 mM KCL, 1 % Triton X100, Protease inhibitor 1 X [Roche], NEM 20uM) was added. The supernatant was collected after a spin at 16000 g for 30 min and incubated with GFP-Trap (Chromtek) or MBP magnetic beads (NEB) for 3 h at 4°C. Beads were magnetically separated from the lysate and washed 5 times in wash buffer (50 mM Tris-Cl, pH 7.4; 150 mM KCL, 1 mM PMSF) until the green colour completely disappeared. The final pull-down beads were transferred to a 1.5 ml tube and again twice with wash buffer. The 3X SDS sample dye was added to the beads and the sample was heated at 70°C for 10 min. The pull-down products were resolved in 4-20 % Tris-Glycine SDS gradient gels (Bio Rad). IP beads used are listed in Supplemental Table 2.
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3

Immunoprecipitation of Plant Proteins

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Immuno-precipitation was performed as previously described (Nair et al., 2020) .
Briefly, Infiltrated or transgenic plant leaves expressing the protein of interest were finely powdered under liquid nitrogen. Three volumes of lysis buffer (50 mM Tris-Cl pH 7.4, 150 mM KCl, 1% Triton-X100, Protease inhibitor 1 X [Roche], NEM 20 μM) was added to 2 g of powdered tissue. The lysate was clarified by high-speed centrifugation and incubated with GFP-Trap (Chromtek) for 3h at 4°C. Beads were magnetically separated from the lysate and washed 5 times in wash buffer (50 mM Tris-Cl, pH 7.4; 150 mM KCl, 1 mM PMSF) until the green colour completely disappeared. The washed beads were transferred to a 1.5 ml tube and again washed twice with wash buffer. The buffer was completely removed and 3X SDS sample dye was added to the beads and incubated at 70°C for 10 min. The pulldown products were resolved in 4-20% Tris-Glycine SDS gradient gels (Bio-Rad).
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