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2 protocols using symmetric di methyl arginine motif sdma

1

Western Blot Analysis of Protein Expression

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Proteins were extracted in RIPA buffer (Boston Bioproducts, #BP-115DG) and separated by SDS-PAGE. They were then transferred onto PVDF membranes and probed with antibodies against Symmetric Di-Methyl Arginine Motif/SDMA (Cell Signaling, #13222, MultiMab rabbit monoclonal antibody mix, 1:1000), HSP90 (BD, #610418, Clone 68, 1:10,000), PRMT5 (Cell Signaling, #2252S, 1:1000), GAPDH (Santa Cruz, #sc-365062, Clone G-9, 1:1000), SOS1 (Cell Signaling, #5890, 1:1000), STAT5B (Santa Cruz, #sc-1656, 1:200), RAF1 (Cell Signaling, #9422, 1:1000), AURKB/AIM1 (BD, #611082, Clone 6, 1:1000), SNRPB (Sigma, #HPA003482, 1:200), SNRPD3 (Sigma, #HPA001170, 1:200), SART3/TIP110 (Bethyl, #A301-521A, 1:10,000), PRP3 (MBL, #D171-3, 1:1000), SNRNP40 (MBL, #RN096PW, 1:1000), anti-H4R3me2s (Abcam, #5823, 1:500) and EIF4E (Cell Signaling, #9742, 1:1000). Proteins of interest were detected with HRP-conjugated α-Rabbit (Cell Signaling, #7074, 1:3000), Rat (Cell Signaling, #7077,1:2000) and α-Mouse (Cell Signaling, #7076, 1:2000) antibodies and visualized with the Pierce ECL Western blotting substrate (Thermo Scientific) using the ImageQuant LAS 4000 imaging system (GE) or film exposure.
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2

Immunofluorescence and in situ Hybridization in Zebrafish

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After fixation or rehydratation, embryos were washed twice with Phosphate Buffered Saline/1% Triton X-100 (PBST), permeabilized with PBST/0.5% Trypsin for 30 sec and washed twice again with PBST. After blocking with PBST/10% Fetal Calf Serum (FCS)/1% bovine serum albumin (BSA) (hereafter termed ‘blocking solution’) for at least 1 h, embryos were incubated with antibodies directed against GFP (Torrey Pine, Biolabs), Prmt5 (Upstate #07405), MEP50/Wdr77 (Cell Signaling Technology #2823) or Symmetric Di-Methyl Arginine Motif (SDMA, Cell Signaling Technology #13222) in blocking solution overnight at 4°C followed by 5 washing steps with PBST. Embryos were then incubated with the appropriate Alexa Fluor-conjugated secondary antibodies (Molecular Probes) for at least 2 h at room temperature and washed three times. Nuclei were then stained with TO-PRO3 (Molecular Probes) and washed twice with PBST. Embryos were dissected, flat-mounted in glycerol and images were recorded on a confocal microscope as above. In situ hybridization was carried out as previously described [35 (link)]. Riboprobes were produced by linearizing PGEMT-cdh5 and PGEMT-fli1a vector by SacII and in vitro transcription by SP6 polymerase. Embryos were dissected, flat-mounted in glycerol and images were recorded on a confocal microscope as above or using the confocal Zeiss LSM 880.
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