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3 protocols using mircute mirna first strand cdna synthesis

1

miRNA Isolation, cDNA Synthesis, and qPCR Detection

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miRcute miRNA isolation, miRcute miRNA first-strand cDNA synthesis and miRcute miRNA qPCR detection kits were purchased from Tiangen Biotech Co., Ltd. (Beijing, China). A quantitative polymerase chain reaction (qPCR) iQ5 Optical System and Image Lab software were obtained from Bio-Rad Laboratories, Inc. (Hercules, CA, USA). The primary antibodies against HIF-1α were purchased from Abcam (Cambridge, MA, USA).
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2

Quantification of ATF5 and miR-141 Expression

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Total RNA was extracted with TRIzol Reagent (Invitrogen). Reverse transcription of total RNA was performed using Prime-Script RT reagent Kit (TaKaRa, Dalian, China). Quantitative real time PCR to measure ATF5 expression was carried out with SYBR® Green PCR Kit (Qiagen, Germany). Micro-RNA was isolated by miRcute miRNA isolation kit (Tiangen, Beijing, China). Reverse transcription of miRNA was performed using miRcute miRNA First-Strand cDNA Synthesis (Tiangen). Quantitative real time PCR to measure miRNA expression was carried out with miRcute miRNA qRT-PCR Detection Kit (Tiangen). Primers used were shown as following: ATF5 forward 5′-AAGTCGGCGGCTCTGAGGTA-3′ and reverse 5′-GGACTCTGCCCGTTCCTTCA-3′, human β-actin forward 5′-CCCAGCACAATGAAGATCAA-3′ and reverse 5′-GATCCACACGGAGTACTTG-3′, GAPDH forward 5′-GAAGGTGAAGGTCGGAGTC-3′ and reverse 5′-GAAGATGGTGATGGGATTTC-3′. In addition, primers of miR-141-3p and U6 were purchased from Tiangen. The mRNA expression of ATF5 was normalized with β-actin and GAPDH, miR-141 expression was normalized with U6. qRT-PCR was performed on iQ5 Real-Time PCR Detection system (Bio-Rad, USA), the results were analyzed by the 2−ΔΔCt method.
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3

Extraction and Quantification of miRNAs and mRNAs

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RNAs were extracted using the miRNeasy MiniKit or RNeasy MiniKit (Qiagen, Hilden, Germany) according to the manufacturer’s instructions. For detection of endogenous miRNAs, an miRcute miRNA First-Strand cDNA Synthesis (TIANGEN BIOTECH, Beijing, China) was used for polyadenylation and reverse transcription. A commercial miRcute miRNA qPCR detection kit was used for measuring miRNA abundance. The U6 small nuclear RNA (TIANGEN BIOTECH) was used for normalization. To detect the relative mRNA levels, a PrimeScript RT Master Mix kit (Takara, Dalian, China) was used for reverse transcription. SYBR Premix Ex Taq (Takara) was used to quantify levels of IFN-α, IFN-β, interferon-stimulated gene 15 (ISG15), and MX1 mRNA. The relative expression levels of these genes were analyzed using the ΔΔCt method (26 (link)), and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mRNA was used as a control. Primers are listed in Table 2. All PCR experiments were performed in triplicate.
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