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4 protocols using inosine

1

Authentic Compound Characterization

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Authentic compounds were purchased from Wako Chemical Co. (Tokyo, Japan), including glutathione, hypoxanthine, xanthine, inosine, uridine, cytidine, guanine, guanosine, and L-ascorbic acid. All solvents were LC–MS grade (Kanto Chemical, Tokyo, Japan).
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Analysis of Nucleosides and Nucleotides using HPLC

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Chemicals and reagents used in this study were of analytical grade or higher. Ammonia solution, glacial acetic acid, and HPLC grade acetonitrile were purchased from Merck, Darmstadt, Germany. Sodium dihydrogen orthophosphate and sodium hydroxide were obtained from Ajax Finechem Pty Ltd., Auckland, New Zealand. Cyclodextrins, cordycepin, 2′-deoxyguanosine, uridine, and 2′-deoxyadenosine were commercially available from Wako Pure Chemical Industry, Ltd., Osaka Japan. Sodium pyrophosphate decahydrate, adenosine 5′-triphosphate disodium salt (ATP), adenosine 3′-monophosphate (AMP), adenosine 5′-diphosphate disodium (ADP), adenosine, and cucurbit[n]urils were obtained from Sigma-Aldrich Co. St. Louis, MO, USA. Cytidine, 2′-deoxyuridine, inosine, thymidine, and 2′-deoxyinosine were purchased from FUJIFILM Wako Pure Chemical Corporation, Japan. Guanosine was obtained from Alfa Aesar, Thermo Fisher Scientific, Heysham, UK. Acridine orange (AO) and berberine (BE) was purchased from Invitrogen Company, Eugene, Oregon, OR USA. Deionized water was prepared using a Millipore Milli Q-Plus system (Millipore, Bedford, MA, USA). Deuterium oxide (D2O) was purchased from Cambridge Isotope Laboratories, Inc., Tewksbury, MA, USA.
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Culturing B. breve MCC1274 with Purines

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B. breve MCC1274 was cultured in YC medium supplemented with 200 μM each of adenosine, inosine, hypoxanthine, and xanthine (FUJIFILM Wako Pure Chemical) for 24 h under anaerobic conditions. Then, the culture medium was centrifuged (10,000 × g, 5 min, 4°C), and the supernatant was stored at −20°C until analysis.
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4

Synthesis of Kyoto Green Fluorescent Dye

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Kyoto Green was synthesized following the procedure described in Ojida et al.23 (link). Magnesium chloride (MgCl2), zinc nitrate (Zn(NO3)2), HEPES minimum 99.5% titration (C8H18N2O4S), p-nitrophynyl thymidine 5′-monophosphate (pNph-5′-TMP), sodium pyrophosphate decahydrate (NaPPi), adenosine 5′-triphosphate disodium salt (ATP), and adenosine 5′-monophosphate disodium salt (AMP) were products of Sigma-Aldrich (St. Louis, MO, USA) or Merck (Darmstadt, Germany). Cordycepin, uridine, cytidine, inosine, thymidine, kaempferol, 2′-deoxyadenosine, 2′-deoxyinosine, 2′-deoxyuridine, and 2′-deoxyguanosine were purchased from Fujifilm Wako Pure Chemical Corporation (Japan). Myricetin, quercetin dihydrate and guanosine were commercially available from Alfa Aesar (UK). Recombinant human ENPP1 was purchased from R&D systems (Minneapolis, USA).
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