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Ti2 confocal microscope

Manufactured by Nikon
Sourced in United States

The Nikon Ti2 confocal microscope is a high-performance imaging system designed for advanced research applications. It features a modular and flexible design, enabling users to configure the instrument to meet their specific needs. The Ti2 utilizes confocal technology to provide optical sectioning and improved image quality, allowing for the visualization of fine details within complex samples.

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14 protocols using ti2 confocal microscope

1

Immunofluorescence Staining of Mouse Brain

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Mouse brains were freshly dissected and fixed in 4% PFA overnight at 4°C. The frozen tissue sections were prepared as previously described (91 (link)). Primary cultured neurons on a Lab-Tek chamber slides were fixed in 4% PFA for 30 minutes at 37°C. After blocking (5% goat or donkey serum [Sigma-Aldrich], 0.3% Triton X-100 in PBS [pH 7.4]), brain slices or cultured neurons were incubated with primary antibodies against GHSR1a (Santa Cruz Biotechnology, sc-10359, 1:100), DRD1 (Abcam, ab81296, 1:200), PSD95 (Cell Signaling Technology [CST], 3450, 1:400), VGLUT1 (Synaptic Systems, 135304, 1:400), MAP2 (Sigma-Aldrich, M4403, 1:300), DCX (Santa Cruz Biotechnology, sc271390, 1:100), and c-Fos (Synaptic Systems, 226308, 1:400) in mixture or separately. After washing with PBS, the slices or neurons were probed with appropriate cross-adsorbed secondary antibodies conjugated to Alexa Fluor 488, Alexa Fluor 594, or Alexa Fluor 647 (Thermo Fisher Scientific, 1:500). Images were collected on a Nikon Ti2 confocal microscope. Mean intensity or volume of different staining were analyzed using Nikon-Elements Advanced Research software accordingly.
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2

Immunohistochemistry of TREK-1 in Brain Slices

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Brain slices were washed with PBS for 20 min at room temperature, followed by antigen retrieval with 10 mM sodium citrate buffer at 85 °C for 30 min. The slices were washed with PBS followed by permeabilization with 0.4% Triton X-100 in PBS at RT for 20 min. Then, the slices were blocked with 10% donkey serum and 0.1% Triton X-100 in PBS at RT for 3 h followed by incubation with primary antibodies, 5% donkey serum, and 0.1% Triton X-100 in PBS at 4 °C overnight. After washing with 0.1% Triton X-100 in PBS at RT for 15 min three times, secondary antibodies, 5% donkey serum, and 0.1% Triton X-100 in PBS at 4 °C were added for 2 h. The slices were counterstained with DAPI and mounted with mounting media (Vectashield, Vector Laboratories Inc., Burlingame, CA, USA). The following antibodies were used: rabbit anti-TREK-1 (Alomone Labs, Jerusalem, Israel, 1:200; RRID: APC-047, 1:200), rat anti-GFAP (ThermoFisher, Waltham, MA, USA; 1:500, RRID: 13-0300, 1:500), and Alexa Fluor 488- and 594-conjugated secondary antibodies (Jackson ImmunoResearch, West Grove, PA, USA; 1:300). All images were acquired using a Nikon Ti2 confocal microscope (Nikon Instruments Inc., Melville, NY, USA).
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3

Quantifying Neuronal Innervation Patterns

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Images were captured using a Nikon Ti2 confocal microscope (Nikon Instruments Inc., Melville, NY) with a 40x (Numerical aperture:1.30) objective at 2 µm z-stacks. Images were taken from the ventral aspect of each hindpaw. Thresholds were applied to the Alexa Fluor-594 and Alexa Fluor-488 signals independently for percent areas, and thresholds were combined to generate the region of interest (ROI) used for the Pearson’s correlation of Alexa Fluor-594 and Alexa Fluor-488 signals. Quantification was performed using Nikon NIS-Elements Advanced Research Software (Nikon Instruments Inc.).
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4

GHSR and DRD1 Protein Interaction Detection

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Protein interactions between GHSR/DRD1 in mouse brain slices were detected using Duolink PLA detection kits (Sigma-Aldrich, DUO92008) following manufacturer’s instructions. The following primary antibodies were used: GHS-R1a (Santa Cruz Biotechnology, sc-10359, 1:100) and anti-DRD1 (Abcam, ab81296, 1:200). The specificity of antibodies to GHSR and DRD1 was validated as previously described (17 (link)). The following Duolink in Situ PLA Probes were used: anti–rabbit PLUS (Sigma-Aldrich, DUO92002) and anti–goat MINUS (Sigma-Aldrich, DUO92006). Images were collected on a Nikon Ti2 confocal microscope. The mean intensity of PLA+ signals was analyzed using Nikon-Elements Advanced Research software.
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5

Immunofluorescence Staining of Brain Slices

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Brain slices were washed with PBS at room temperature for 20 min, followed by antigen retrieval at 85 °C for 30 min using 10 mM sodium citrate buffer. Slices were permeabilized with 0.4% Triton X-100 in PBS at RT for 20 min. The slices were then blocked with 10% donkey serum and 0.1% Triton X-100 in PBS at RT for 3 h, followed by incubation with primary antibodies, 5% donkey serum, and 0.1% Triton X-100 in PBS at 4 ◦C overnight. After washing three times with 0.1% Triton X-100 in PBS at RT for 15 min, secondary antibodies, 5% donkey serum, and 0.1% Triton X-100 in PBS were added for 2 h at 4 °C. The slices were counterstained with DAPI and mounted with a mounting medium (Vectashield, Vector Laboratories Inc., Burlingame, CA, USA). The following antibodies were used: rabbit anti-TREK1 (Alomone Labs, Jerusalem, Israel, 1:200; RRID: APC-047, 1:200), mouse anti-β-COP (Santa Cruz Biotechnology, D-10, 1:200), rat anti-GFAP (Thermo Fisher, Waltham, MA, USA; 1:500, RRID:13-0300, 1:500), and Alexa Fluor 488-, 594-, and 647-conjugated secondary antibodies (Jackson ImmunoResearch, West Grove, PA, USA; 1:300). All images were acquired using a Nikon Ti2 confocal microscope (Nikon Instruments, Inc., Melville, NY, USA).
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6

Cell Morphology Analysis via F-actin Staining

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F-actin staining was conducted to assess cell morphology using Actin-tracker Red-555 (diluted 1:100) and DAPI (both from Beyotime). Fluorescence images were captured using a Nikon Ti2 confocal microscope.
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7

Plasmid Transfection and Immunofluorescence Analysis

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For each transfection, 50 000 cells were seeded onto each glass slide. The cells were transfected with 1ug of each indicated plasmid and fixed and stained 24 h post transfection. Primary antibodies were incubated for overnight at 4°C (cell signaling anti-FLAG 9A3, cell signaling anti-T7 D9E1X and secondary antibodies (Alexa Fluor 488 and Alexa Fluor 488) were incubated for 1 h at room temperature. Slides were mounted with DAPI (4′,6′-diamidino-2-phenylindole), and confocal analysis was performed using Nikon Ti2 confocal microscope.
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8

Kcnk1 mRNA Expression Analysis using RNAscope

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FISH was performed using an RNAscope Fluorescent Multiplex Kit (Advanced Cell Diagnostics, RRID; SCR_012481, CA, USA) and a Kcnk1-C1 probe (Advanced Cell Diagnostics, Cat#; ACD 535421, CA, USA) according to the manufacturer’s instructions. Subsequently, 15-μm fresh frozen brain slices were fixed with 4% PFA for 15 min and then washed in 50% (×1), 70% (×1), and 100% (×2) ethanol for 5 min each. After air drying for 5 min, the slices were digested with protease solution at RT for 30 min, followed by washing with PBS three times. The pre-warmed probe was applied to the slices, which were incubated in a humidified oven at 40 °C for 2 h. Slices were washed twice with the wash buffer and then amplified with AMP 1 to AMP 4, followed by counterstaining with DAPI. Slices were mounted with ProLong Gold Antifade (Thermo Fisher Scientific, Cat#; P36930, MA, USA). Images were acquired with a Ti2 confocal microscope (Nikon, RRID; SCR_021068, Tokyo, Japan). Z-stack images were acquired using a Nikon Eclipse Ti2 confocal microscope (Nikon, RRID; SCR_021068, Tokyo, Japan) using a Plan Apo Lambda 40x/0.95 objective (Nikon, Material#: MRD00405, Tokyo, Japan) with a 0.6232 × 0.6232 × 2 μm3 voxel size. Kcnk1 mRNA spots were manually counted from maximum z-projection images using Fiji software (Max Plank Institute of Molecular Cell Biology and Genetics, RRID: SCR_002285, Dresden, Germany).
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9

3D Bioprinting of GelMA-MSC Constructs

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Briefly, a 10% GelMA solution (in PBS) containing 0.3% lithium phenyl-2,4,6-trimethylbenzoyl phosphate (LAP) as photo-initiators was mixed with MSCs-laden GMs in a volume ratio of 1:2 at 37°C. The bead-suspended blend was transferred to a 1 ml syringe loaded on a LivPrint N bioprinter (Medprint) and used to fabricate a grid human-shaped model with a layer height of 0.4 mm. Extrusion speed was set to 0.09 mm/s while nozzle movement speed was set to 18 mm/s using a 20 G nozzle. The printing process was carried out at room temperature with ultraviolet light at 405 nm used for crosslinking. The scaffold was incubated in MSCM with media changes every 2 or 3 days. To assess the impact of the printing process on cell viability, live/dead staining was performed using calcein-AM and PI. Fluorescence images were captured using a Nikon Ti2 confocal microscope (capture depth 100 μm).
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10

Immunofluorescence Staining of Organoid Cryosections

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Organoids were fixed in 4% paraformaldehyde (PFA) overnight at 4°C and then moved to 30% sucrose at 4°C for 24 h. Twenty‐five‐μm‐thick cryosections were obtained with a cryostat (Leica). For immunofluorescence staining, organoid sections were outlined with a hydrophobic pen (Vector Laboratories), permeabilized with 0.1% Triton X‐100 (v/v) in phosphate‐buffered saline (PBS), and blocked for 1 h at room temperature with 5% donkey serum. The tissue sections were incubated with primary antibodies as indicated for 2 h at room temperature, followed by washing and secondary antibody incubation. Detailed antibody staining was described in Table 1. Hoechst 33342 dye (1:5000) was used to mark nuclei. Images were captured on a Nikon Ti2 confocal microscope equipped with an automated stage and further analyzed with ImageJ software. For image quantification, at least three randomized fields were imaged per organoid section. The expression of the averaged intensity was calculated by dividing the integrated intensity by the total area of the cells.
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