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80 protocols using collagen 4

1

Quantum Dot Labeling of Endothelial and Pericytic Cells

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Quantum dots (QDs) are novel fluorescent molecular probes (Jiayuan Quantum Dots, Wuhan, China) and compared with conventional fluorescence modalities, they exhibit high sensitivity, high specificity, clear background, short operation time, high fluorescence intensity, and resistance to quenching. In this study, we used red QDs (wavelength 605 nm) to label CD31 and green QDs (wavelength 545 nm) to label αSMA, as described previously.17 (link),18 (link) Endothelial cells and pericytes were labeled using two antigens (CD31 and αSMA; Abcam, Cambridge, UK) with QD probes as secondary antibodies (CD31, IgG–QDs, 605 nm; SA–QDs, 525 nm). Additionally, endothelial cells and the basement membrane were labeled using two antigens (CD31 and collagen IV; Abcam), with QD probes used as secondary antibodies (CD31, IgG–QDs, 605 nm; collagen IV, SA–QDs, 525 nm).
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2

Immunoblotting Analysis of EndMT and EMT Proteins

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EndMT and EMT protein levels were analyzed by immunoblotting. Primary antibodies against FSP-1, αSMA, Collagen-4 (Abcam), CD31 (Santa Cruz Biotechnologies, Santa Cruz CA, USA), E-cadherin (Abcam), and β-actin (Sigma-Aldrich, St. Louis, MO, USA) were used for immunoblotting. Briefly, equal amounts (80 μg) of extracted proteins were separated by 10% sodium dodecyl sulfate–polyacrylamide gel electrophoresis and transferred onto Immobilon-FL 0.4 μM polyvinylidenedifluoride membranes (Millipore, Bedford, MA, USA). Anti-rabbit IgG (Vector Laboratories, Burlingame, CA, USA) was used as the secondary antibody. Blots were developed using Super Signal West Pico Chemiluminescent Substrate (Pierce, Woburn, MA, USA).
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3

Antibody Panel for Fibrosis Analysis

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The antibody to FPN1 (#L3266) was obtained from Santa Cruz Biotechnology (USA). The antibody to GAPDH (#5174) was obtained from cell signaling Company (USA). The antibody to Collagen-1 (#ab34710), Collagen-4 (#ab6586), Laminin (#ab11575), MMP9 (#ab38898), a-SMA (#ab5694), VEGF (#ab46154), TGF-B (#ab92486), INOS (#ab15323) were obtained from abcam (USA). The antibody to F4/80 (#123107) and CD206 (#141706) were obtained from Biolegend. The antibody to F4/80 (#12-4801-82), CD68 (#11-0689-42) and CD16/32 (#4303632) were obtained from Invitrogen. Sirus Red Staining Kit (#G1471) was obtained from Solarbio (China) and Masson Staining Kit (#D026-1-3) was obtained from NanJing JianCheng (China).
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4

Protein Expression Analysis in Kidney Tissue

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GECs were lysed in RIPA buffer [50 mM Tris·HCl, pH 7.3; 150 mM NaCl; 0.1 mM EDTA; 1% (vol/vol) sodium deoxycholate; 1% (vol/vol) Triton X-100; 0.2% NaF; and 100 µM Na3VO4] supplemented with cOmplete protease inhibitors (Roche Applied Science, Indianapolis, IN). The kidney homogenate was centrifuged at 12,000 g for 30 min at 4 °C, and the protein concentration of the supernatant was determined by the Bradford method. Different amounts of extracted protein were separated by SDS-PAGE and transferred onto Immobilon-FL 0.4-μm polyvinylidene difluoride membranes (Millipore). Tris-buffered saline containing 0.1% Tween 20 was used as the wash buffer. After the membranes were treated with primary antibodies, anti-rabbit (1:5,000; Cell Signaling Technology, Danvers, MA) and anti-mouse (1:6,000 for β-actin; Cell Signaling Technology) secondary antibodies were used as appropriate. Detection of labeled proteins was performed with an enhanced chemiluminescence system (ECLTM PRN 2106; Amersham Pharmacia Biotech, Buckinghamshire, UK). The band intensities were analyzed using a gel documentation system (Bio-Rad Gel Doc 1000 and Multi-Analyst version 1.1).
Immunoblotting was performed using primary antibodies against collagen-1 (Abcam), collagen-4 (Abcam), fibronectin (Santa Cruz Biotechnology, Dallas, TX), αSMA (Abcam), and β-actin (Cell Signaling Technology).
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5

Immunohistochemical Analysis of Apoptosis Markers

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The paraffin enwrapped tissue sections were conventionally dewaxed, heated with microwave for 15 min, incubated with the first antibody of 1:200 diluted CIDEC (Abcam, Cambridge, MA, USA), 1:1000 diluted cleaved caspase 3 (C‐caspase3; Cell Signaling Technology, Danvers, MA, USA), 1: 30 diluted cleaved PARP (C‐PARP; Boster Biological Technology, Wuhan, China), TGF‐β1 (Proteintech, Rosemont, IL, USA), collagen 1 and collagen 4 (Abcam) at 4℃ overnight, respectively, then incubated with the second antibody for 1h at 37℃. The results were observed and photographed under FV1000 laser scanning confocal microscope (Olympus, Tokyo, Japan). The IOD values were measured and analyzed by Image‐Pro Plus 5.0 automatic image analysis system (Media Cybernatics, Houston, TX, USA).
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Immunohistochemical Analysis of Mouse Pancreata

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Sections of formalin-fixed, paraffin-embedded mouse pancreata were stained using antibodies against VEGF-A (clone EP1176Y; Abcam, Cambridge, UK), collagen 4 (rabbit polyclonal, Abcam), laminin a5 (rabbit polyclonal, Abcam), and laminin b2 (rabbit polyclonal; Novus Biologicals, Littleton, CO). Glycoproteins in the islets were stained by using the periodic acid-Schiff method. Staining intensity was assessed in 200Â magnification micrographs using ImageJ software.
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7

Protein Extraction and Immunoblotting from Rat Kidneys

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Total tissue and cell protein extracted from rat kidneys and GMCs were lysed with RIPA lysis buffer (Beyotime, China) and measured with a BCA Protein Assay Kit (Beyotime, China). Nuclear protein was extracted using the Nuclear and Cytoplasmic Protein Extraction kit (cat. no. P0028; Beyotime Institute of Biotechnology, Nanjing, China) following the manufacturer’s instructions. The protein was separated by 10% SDS–PAGE and electrophoretically transferred to polyvinylidene fluoride membranes. The membranes were blocked with 5% skim milk and incubated with the following primary antibodies overnight at 4 °C: TRPC6, collagen IV, collagen I, fibronectin, and NFAT2 from Abcam (Cambridge, MA, USA) as well as β-actin and histone 3 from ABclonal (Wuhan, China). On the next day, HRP-conjugated goat anti-rabbit or goat anti-mouse IgG, which served as the secondary antibody, was incubated with the membranes for 2 h at room temperature to detect immune response bands. ECL chemiluminescence was used for imaging.
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8

Western Blot Analysis of Kidney Proteins

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Total proteins were extracted from the kidneys or HK‐2 cells and the concentration was measured by BCA protein assay kit (Beyotime, Shanghai, China). Western blot assay was performed with the standard method. Briefly, proteins were separated via sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS‐PAGE). PVDF membrane (Millipore, Bedford, MA, USA) was used to electro‐transfer. After blocking with 5% skim milk, the membrane was incubated overnight at 4°C with primary antibodies: anti‐Klotho (1:500, Abcam, #203576), TGF‐β1 (1:1000, Abcam, #92486), TGFβ‐RI (1:800, Abcam, #31013), TGFβ‐RII (1:1000, Abcam #186838), α‐SMA (1:1000, CST, #56856), Collagen I (1:2000, Abcam, #34710), Collagen IV (1:1500, Abcam, #6586), Smad 2/3 (1:1000, Santa Cruz, #398844), p‐Smad 2/3 (1:800, Abcam, #63399), Smad 4 (1:1000, CST, #38454) and Smad 7 (1:1000, Santa Cruz, #365846), followed by incubation with secondary antibody at room temperature for 1 hour. Glyceraldehyde 3‐phosphate dehydrogenase (GAPDH) was used as the internal control. Protein bands were visualized by enhanced chemiluminescence (ECL) reagent and exposed using BioImaging Systems (UVP, Upland, CA, USA). The relative protein levels were quantified using the Image J software (National Institutes of Health, Montgomery, MD, USA). All the assays were performed in triplicate.
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9

Immunocytochemical Analysis of Fibroblast Markers

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The fibroblasts were cultured on sterile cover glasses (Marienfeld Laboratory, Lauda-Königshofen, Germany) and grown until nearly confluent. The cells were washed three times with PBS and then fixed in 4% paraformaldehyde for 10 minutes at 4℃ and in 100% methanol for 10 minutes at 4℃. Individual chambers were incubated with antibody to PAI-1 (1:300; Abcam), fibronectin (1:300; Abcam), collagen I (1:300; Abcam), collagen IV (1:300; Abcam), smooth muscle α-actin (1:300; Sigma-Aldrich), F-actin (1:300; Sigma-Aldrich), or Smad2/3 (1:200; Cell Signaling, Beverly, MA, USA) overnight at 4℃ in a moist chamber. After several washes with PBS, the chambers were incubated with fluorescein isothiocyanate-conjugated (1:300; Zymed Laboratories, South San Francisco, CA, USA) or tetramethyl rhodamine isothiocyanate-conjugated (1:300; Jackson ImmunoResearch Laboratories Inc., West Grove, PA, USA) secondary antibodies for 3 hours at room temperature. Mounting medium containing 4,6-diamidino-2-phenylindole (Vector Laboratories Inc., Burlingame, CA, USA) was applied to the chamber and nuclei were labeled. Signals were visualized, and digital images were obtained with a confocal microscope (FV1000; Olympus, Tokyo, Japan) under identical exposure settings.
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10

Visualizing Extracellular Matrix Structure

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The Click-iT® EdU Alexa Fluor® 488 Imaging Kit and Alexa Fluor® 594 phalloidin were from Invitrogen. Matrigel (lrECM) and Type I collagen were from BD Bioscience. ShP4HA2 plasmids were purchased from Sigma. 1, 4-DPCA was purchased from Cayman Chemical. Masson’s trichrome stain kit was purchased from Polysciences, Inc. The following antibodies were obtained as indicated: integrin α6 (Millipore); collagen I (Abcam); collagen IV (Abcam); P4HA2 (Santa Cruz); tubulin (Millipore).
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